Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b14r
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill... 30 1.7
At5g15130.1 68418.m01773 WRKY family transcription factor contai... 29 2.3
At3g13410.1 68416.m01686 expressed protein 29 2.3
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p... 29 2.3
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 29 3.0
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof... 29 4.0
At4g01960.1 68417.m00261 expressed protein 29 4.0
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 28 5.3
At3g12820.1 68416.m01599 myb family transcription factor (MYB10)... 28 5.3
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 28 5.3
At2g45680.1 68415.m05680 TCP family transcription factor, putati... 28 7.0
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l... 27 9.2
>At1g44120.1 68414.m05096 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2114
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 192 CSSDVTNNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 311
CSS +N VV EG+G ++ ++ + KS+ E D+ E
Sbjct: 990 CSSHPSNRLVVMEGNGLEIIAENLQRNKSNTQENSSDSEE 1029
>At5g15130.1 68418.m01773 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain; TMV
response-related gene product, Nicotiana tabacum,
EMBL:AB024510
Length = 548
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +3
Query: 168 RFDIANSYCSSDVTNNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFS 326
R I+N+ ++ TNN+ C G S L ++++ +G+ Q +++ FS
Sbjct: 475 RHSISNNIQQTNTTNNNKGCGGYFSSLLMSNIMASNQTGASLDQPSSQLPPFS 527
>At3g13410.1 68416.m01686 expressed protein
Length = 321
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 126 GWSNFASEEIDLEVRFDIANSYCSSDVTNNDVVCEGDGSGSLSN 257
GWSNF E LE D+A + ++ ++DV + + +L N
Sbjct: 70 GWSNFLCSEKKLEQPVDVALVFIGRELLSSDVSSKRNSDPALVN 113
>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
protein (GI:507127) [Streptococcus pyogenes]
Length = 509
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +1
Query: 112 RKLLTAGP-TSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEA 288
RK LTAG SRPK +R D++ +++ T + ++ EAV T + +
Sbjct: 130 RKTLTAGDIASRPKMETFR-DISDDMMVNEDKDETFDMHIQKVEAVLKDLTMTSEKSHSS 188
Query: 289 KDLRTRLKMRISPSAEPTDAETLGTARTKLS 381
L + S++ TD + + R+ LS
Sbjct: 189 DSLAKNTSANVDFSSQKTD-DPVTDVRSDLS 218
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -1
Query: 551 IGELLRAADPLRRDGYAGSWSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYVGT 384
+GE + +D L R GS + G +F G V + K DF+S S+VGT
Sbjct: 218 VGEKI-LSDDLSRKLSVGSMTTDGNHSGDSFQGSVNEKKVHDFNSSCPMNYSFVGT 272
>At5g42870.1 68418.m05225 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 930
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 252 SNDVLKGKS-SGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESGADVADTTQMQGAE 425
+ D K +S SG Q E FSFS D C GNS G+ +DT ++ G E
Sbjct: 374 AGDFEKSQSASGESILQPEIEEEQFSFSDLDECKPGGNS----SVGSSSSDTVKVDGKE 428
>At4g01960.1 68417.m00261 expressed protein
Length = 236
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 141 ASEEIDLEVRFDIANSYCSSDVTNNDVVCEGDGSGSLSNDVLKGKSS--GSERPQD 302
+ EE DL+V + + ++T N V EGD S ++ N V G+ S GSE+ D
Sbjct: 6 SGEEEDLDVDIEDGRFNETQEITTNLVSAEGD-SENVLNHVWSGRLSFDGSEKSAD 60
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 150 EIDLEVRFDIANSY--CSSDVTNNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAEN 314
E +E DI N CS +++ EG+ L N+ L+ +S+GS+ D A N
Sbjct: 126 EDKVETNDDIKNEEAGCSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHN 182
>At3g12820.1 68416.m01599 myb family transcription factor (MYB10)
similar to myb factor GI:1945279 from [Oryza sativa]
Length = 239
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +3
Query: 114 EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTNNDVVCEGDGSGSLSNDVLKGKSSGSER 293
E+ + W+ + + V+ I++S SSDVTN+ V S S+S+ VL+ SER
Sbjct: 105 EIKNVWNTHLKKRL---VKRSISSS--SSDVTNHSVSSTSSSSSSISS-VLQDVIIKSER 158
Query: 294 PQDAAE 311
P E
Sbjct: 159 PNQEEE 164
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 120 VDGWSNFASEEIDLEVRFDIANSYCSSDVTNNDVVCEGDGSGSLSN 257
+DG+ N A E+ + V + N+Y + V N+V+ G+LS+
Sbjct: 44 LDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSD 89
>At2g45680.1 68415.m05680 TCP family transcription factor, putative
similar to PCF2 (GI:2580440) [Oryza sativa]
Length = 356
Score = 27.9 bits (59), Expect = 7.0
Identities = 25/110 (22%), Positives = 46/110 (41%)
Frame = +1
Query: 130 GPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRL 309
G S + + W L+ P +IAA + T+ A T + A ++L +
Sbjct: 107 GHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMSVNGTLKIPTTTNADSDMGENLMKKK 166
Query: 310 KMRISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPE 459
+ R S ++E D +A + L+ + T T + + L SS + P+
Sbjct: 167 RKRPS-NSEYIDISDAVSASSGLAPIATTTTIQPPQALASSTVAQQLLPQ 215
>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
similarity to dienelactone hydrolase [Rhodococcus
opacus] GI:23094407; contains Pfam profile PF01738:
Dienelactone hydrolase family
Length = 310
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 455 GRVTDVKADDFSSLHLRRVSYVGTRLNLVLA 363
GRV DV A D S VS+ GTR++ +A
Sbjct: 205 GRVVDVLATDESGYFSTGVSFYGTRIDSAVA 235
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,609,747
Number of Sequences: 28952
Number of extensions: 260788
Number of successful extensions: 813
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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