Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b14f
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    30   1.3  
At5g15130.1 68418.m01773 WRKY family transcription factor contai...    29   1.8  
At3g13410.1 68416.m01686 expressed protein                             29   1.8  
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p...    29   1.8  
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta...    29   2.4  
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof...    29   3.1  
At4g01960.1 68417.m00261 expressed protein                             29   3.1  
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    28   4.1  
At3g12820.1 68416.m01599 myb family transcription factor (MYB10)...    28   4.1  
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta...    28   4.1  
At2g45680.1 68415.m05680 TCP family transcription factor, putati...    28   5.4  
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l...    27   7.2  
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co...    27   9.5  

>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 516  CSSDVTNNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 397
            CSS  +N  VV EG+G   ++ ++ + KS+  E   D+ E
Sbjct: 990  CSSHPSNRLVVMEGNGLEIIAENLQRNKSNTQENSSDSEE 1029


>At5g15130.1 68418.m01773 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain; TMV
           response-related gene product, Nicotiana tabacum,
           EMBL:AB024510
          Length = 548

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -1

Query: 540 RFDIANSYCSSDVTNNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFS 382
           R  I+N+   ++ TNN+  C G  S  L ++++    +G+   Q +++   FS
Sbjct: 475 RHSISNNIQQTNTTNNNKGCGGYFSSLLMSNIMASNQTGASLDQPSSQLPPFS 527


>At3g13410.1 68416.m01686 expressed protein
          Length = 321

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 582 GWSNFASEEIDLEVRFDIANSYCSSDVTNNDVVCEGDGSGSLSN 451
           GWSNF   E  LE   D+A  +   ++ ++DV  + +   +L N
Sbjct: 70  GWSNFLCSEKKLEQPVDVALVFIGRELLSSDVSSKRNSDPALVN 113


>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
           protein (GI:507127) [Streptococcus pyogenes]
          Length = 509

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = -2

Query: 596 RKLLTAGP-TSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEA 420
           RK LTAG   SRPK   +R D++  +++      T  +  ++ EAV    T +      +
Sbjct: 130 RKTLTAGDIASRPKMETFR-DISDDMMVNEDKDETFDMHIQKVEAVLKDLTMTSEKSHSS 188

Query: 419 KDLRTRLKMRISPSAEPTDAETLGTARTKLS 327
             L       +  S++ TD + +   R+ LS
Sbjct: 189 DSLAKNTSANVDFSSQKTD-DPVTDVRSDLS 218


>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
           domain-containing protein similarity to
           TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
           SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
           DnaJ domain, PF00515: TPR Domain
          Length = 1165

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 157 IGELLRAADPLRRDGYAGSWSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYVGT 324
           +GE +  +D L R    GS +  G     +F G V + K  DF+S      S+VGT
Sbjct: 218 VGEKI-LSDDLSRKLSVGSMTTDGNHSGDSFQGSVNEKKVHDFNSSCPMNYSFVGT 272


>At5g42870.1 68418.m05225 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 930

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 456 SNDVLKGKS-SGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESGADVADTTQMQGAE 283
           + D  K +S SG    Q   E   FSFS  D C   GNS      G+  +DT ++ G E
Sbjct: 374 AGDFEKSQSASGESILQPEIEEEQFSFSDLDECKPGGNS----SVGSSSSDTVKVDGKE 428


>At4g01960.1 68417.m00261 expressed protein
          Length = 236

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -1

Query: 567 ASEEIDLEVRFDIANSYCSSDVTNNDVVCEGDGSGSLSNDVLKGKSS--GSERPQD 406
           + EE DL+V  +      + ++T N V  EGD S ++ N V  G+ S  GSE+  D
Sbjct: 6   SGEEEDLDVDIEDGRFNETQEITTNLVSAEGD-SENVLNHVWSGRLSFDGSEKSAD 60


>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 558 EIDLEVRFDIANSY--CSSDVTNNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAEN 394
           E  +E   DI N    CS   +++    EG+    L N+ L+ +S+GS+   D A N
Sbjct: 126 EDKVETNDDIKNEEAGCSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHN 182


>At3g12820.1 68416.m01599 myb family transcription factor (MYB10)
           similar to myb factor GI:1945279 from [Oryza sativa]
          Length = 239

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 22/66 (33%), Positives = 34/66 (51%)
 Frame = -1

Query: 594 EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTNNDVVCEGDGSGSLSNDVLKGKSSGSER 415
           E+ + W+    + +   V+  I++S  SSDVTN+ V      S S+S+ VL+     SER
Sbjct: 105 EIKNVWNTHLKKRL---VKRSISSS--SSDVTNHSVSSTSSSSSSISS-VLQDVIIKSER 158

Query: 414 PQDAAE 397
           P    E
Sbjct: 159 PNQEEE 164


>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
           putative / U6 snRNA-associated Sm-like protein, putative
           / Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
           snRNA-associated Sm-like protein LSm6 [Mus musculus]
          Length = 91

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 588 VDGWSNFASEEIDLEVRFDIANSYCSSDVTNNDVVCEGDGSGSLSN 451
           +DG+ N A E+ +  V   + N+Y  + V  N+V+      G+LS+
Sbjct: 44  LDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSD 89


>At2g45680.1 68415.m05680 TCP family transcription factor, putative
           similar to PCF2 (GI:2580440) [Oryza sativa]
          Length = 356

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 25/110 (22%), Positives = 46/110 (41%)
 Frame = -2

Query: 578 GPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRL 399
           G  S  + + W L+   P +IAA  + T+   A          T + A     ++L  + 
Sbjct: 107 GHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMSVNGTLKIPTTTNADSDMGENLMKKK 166

Query: 398 KMRISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPE 249
           + R S ++E  D     +A + L+ + T  T +  + L SS +     P+
Sbjct: 167 RKRPS-NSEYIDISDAVSASSGLAPIATTTTIQPPQALASSTVAQQLLPQ 215


>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
           similarity to dienelactone hydrolase [Rhodococcus
           opacus] GI:23094407; contains Pfam profile PF01738:
           Dienelactone hydrolase family
          Length = 310

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 253 GRVTDVKADDFSSLHLRRVSYVGTRLNLVLA 345
           GRV DV A D S      VS+ GTR++  +A
Sbjct: 205 GRVVDVLATDESGYFSTGVSFYGTRIDSAVA 235


>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 587

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 91  DVDFEPNSQRILDIVISNLFNEIGEL 168
           D D+E + QR +D+++    N +G+L
Sbjct: 249 DKDYEDSKQREIDVLVKKTMNVLGDL 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,356,664
Number of Sequences: 28952
Number of extensions: 209551
Number of successful extensions: 660
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)