Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b13r
         (767 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.88 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   3.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.2  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 224 GIRPVLVPSDPGVGSAGGRPVEAVPVPR 141
           G+R  + P   G   +GG+P + +P PR
Sbjct: 55  GLRQGIPPHHYGGPPSGGQPPQGMPYPR 82


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 194 PGVGSAGGRPVEAVPVPR 141
           P +G   G P+E+VP P+
Sbjct: 97  PALGFGLGHPLESVPFPQ 114


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = -1

Query: 551 WQQSVYASCIPDETPPPLPGHKVHSNFYF 465
           W+      C   + P P  GH +   F+F
Sbjct: 606 WENVTNIQCPNADLPCPKDGHVILETFHF 634


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = -1

Query: 551 WQQSVYASCIPDETPPPLPGHKVHSNFYF 465
           W+      C   + P P  GH +   F+F
Sbjct: 606 WENVTNIQCPNADLPCPKDGHVILETFHF 634


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 184 PTPGSLGTSTGRMPWGRATN 243
           P PGSLG+    +P G + N
Sbjct: 214 PPPGSLGSMGVSVPCGTSGN 233


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,394
Number of Sequences: 336
Number of extensions: 3495
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)