Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b13r
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe...    83   3e-17
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    29   0.73 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.9  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.8  

>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 305

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 37/72 (51%), Positives = 52/72 (72%), Gaps = 3/72 (4%)
 Frame = -2

Query: 220 YDQYSFQVIPVLGQLVAGQWKPYQYLVESIRQFPNQEKFKMMIEDAGFR---QVAYENLT 50
           Y QYSF+++P+LG ++AG  + Y+YLVESI +FP+ + F  MIEDAGF    +  YE L+
Sbjct: 234 YRQYSFKILPLLGTIIAGDSQSYEYLVESIERFPDAKTFAKMIEDAGFTLAGETGYETLS 293

Query: 49  FGTVAIHSGFKI 14
           FG  AIH+G K+
Sbjct: 294 FGIAAIHTGIKL 305


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 187 TPGSLGTS-TGRMPWGRATNLYIYRSSA 267
           T GSLG   TG + W R  N YI RS+A
Sbjct: 127 TSGSLGFRITGILSWDRTNNTYIKRSTA 154


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 148 TGTASTGRPPADPTPGSLGTSTGRMP 225
           T T+ST  PP   +  S GTS+  +P
Sbjct: 308 TSTSSTSTPPPPASTSSTGTSSSPLP 333



 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 57  TSRSEPWPSTPASRSNYVL 1
           TS S P+ STP + SNY +
Sbjct: 498 TSTSVPYTSTPVTSSNYTI 516



 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 57  TSRSEPWPSTPASRSNYVL 1
           TS S P+ STP + SNY +
Sbjct: 557 TSTSVPYTSTPVTSSNYTI 575


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 744 GCEYFYKPRQ*RNESKMAAAIVRFHSKLLLSLV-AHGAYCMQK 619
           GC Y  +  + +N+S + A     H  L + +V A G Y  QK
Sbjct: 357 GCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQK 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,264
Number of Sequences: 5004
Number of extensions: 55804
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)