Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b13r
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0375 - 43152161-43152262,43152556-43152664,43153433-431535... 103 2e-22
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 30 2.3
03_05_0522 - 25161595-25162285,25162394-25163139 29 3.1
12_02_0579 + 20764626-20765123,20765135-20766064,20767181-207672... 28 7.1
07_03_1653 + 28415131-28415326,28415396-28415490,28415604-28415828 28 7.1
10_08_0140 + 15149534-15149729,15149810-15150038,15150118-15150238 28 9.4
10_05_0109 - 9248031-9248276,9250196-9250471 28 9.4
10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986 28 9.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 23 9.6
>01_07_0375 -
43152161-43152262,43152556-43152664,43153433-43153504,
43153690-43153834,43153930-43154085,43154557-43154618,
43154695-43155020
Length = 323
Score = 103 bits (247), Expect = 2e-22
Identities = 47/69 (68%), Positives = 55/69 (79%)
Frame = -2
Query: 220 YDQYSFQVIPVLGQLVAGQWKPYQYLVESIRQFPNQEKFKMMIEDAGFRQVAYENLTFGT 41
YD YSF VIP +G+LVAG + YQYLVESIR+FPNQEKF MI++AGF +V YENL G
Sbjct: 255 YDVYSFSVIPAVGELVAGDRQSYQYLVESIRRFPNQEKFAQMIQEAGFERVEYENLVGGV 314
Query: 40 VAIHSGFKI 14
VAIHSG K+
Sbjct: 315 VAIHSGLKL 323
>01_06_0556 +
30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 86 VFYHHLEFLLIRKLPDALDEVLVRLP 163
VFY H +FL R AL VLVR+P
Sbjct: 627 VFYKHRDFLFYRPWTFALPNVLVRIP 652
>03_05_0522 - 25161595-25162285,25162394-25163139
Length = 478
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = -1
Query: 506 PPLPGHKVHSNFYFFYNKQLFFLSLF------LFIDPTISQSRYIDAILDWFL 366
PPLP H +F+F YN+ L +F+ P ++ +Y I D L
Sbjct: 130 PPLPSHSTKLDFWFLYNQGLIVFDPIVSPHYEVFMIPFVNSEQYCIEIADLVL 182
>12_02_0579 +
20764626-20765123,20765135-20766064,20767181-20767275,
20767342-20767384,20767869-20768231
Length = 642
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 32 DGHGSEREVFVGHLSESCVFYHHLEF-LLIRKLPDALDEVLVRLP 163
DG G + V L +SC HLE L +R L +++ + ++LP
Sbjct: 445 DGDGDQTNVAAVRLLKSCTAVDHLELRLTVRVLHNSIIDTKLQLP 489
>07_03_1653 + 28415131-28415326,28415396-28415490,28415604-28415828
Length = 171
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +2
Query: 17 LEAGVDGHGSEREVFVGHLSESCVFYHHLEFLLIRK 124
L G G+G+ + F+G +S+ C + H +++++
Sbjct: 125 LVVGSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVKQ 160
>10_08_0140 + 15149534-15149729,15149810-15150038,15150118-15150238
Length = 181
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 17 LEAGVDGHGSEREVFVGHLSESCVFYHHLEFLLIRKLPDALDE 145
L G G G+ + F+G +S+ C ++++ PDA DE
Sbjct: 130 LVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVKPPPDAGDE 172
>10_05_0109 - 9248031-9248276,9250196-9250471
Length = 173
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 151 GTASTGRPPADPTPGSLGTSTGRMPWGRATNL 246
G+ S GR P GS T+TG PW + L
Sbjct: 40 GSRSNGRRHHGPLLGSKDTTTGNAPWSCRSTL 71
>10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986
Length = 700
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 226 WGRATNLYIYRSSAQHIVITMLRSKVKNTYRLF 324
W AT LYI RS A+H + ++V + Y +F
Sbjct: 465 WHIATELYIRRSKARHAKELVEATEVLSNYMMF 497
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 23.4 bits (48), Expect(2) = 9.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -1
Query: 521 PDETPPPLPGHKV 483
P PPPLP H V
Sbjct: 620 PPPPPPPLPNHSV 632
Score = 22.6 bits (46), Expect(2) = 9.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 545 QSVYASCIPDETPPPLP 495
QS YAS P PPP P
Sbjct: 577 QSNYASSQPPPPPPPPP 593
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,010,815
Number of Sequences: 37544
Number of extensions: 390322
Number of successful extensions: 1316
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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