Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b13r
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48276| Best HMM Match : RVT_1 (HMM E-Value=0.57)                    28   9.5  
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)         28   9.5  

>SB_48276| Best HMM Match : RVT_1 (HMM E-Value=0.57)
          Length = 427

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 536 YASCIPDETPPPLPGHKVH-SNFYFFYN 456
           +AS +P + PPP PGH  + ++F  ++N
Sbjct: 140 HASPVPRDEPPPKPGHSWYLAHFATYHN 167


>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 536  YASCIPDETPPPLPGHKVH-SNFYFFYN 456
            +AS +P + PPP PGH  + ++F  ++N
Sbjct: 924  HASPVPRDEPPPKPGHSWYLAHFATYHN 951


>SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
          Length = 1584

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 536 YASCIPDETPPPLPGHKVH-SNFYFFYN 456
           +AS +P + PPP PGH  + ++F  ++N
Sbjct: 617 HASPVPRDEPPPKPGHSWYLAHFATYHN 644


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,221,236
Number of Sequences: 59808
Number of extensions: 434342
Number of successful extensions: 991
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)