Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b13r
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57300.1 68418.m07158 UbiE/COQ5 methyltransferase family prot...    98   7e-21

>At5g57300.1 68418.m07158 UbiE/COQ5 methyltransferase family protein
           similar to ubiquinone biosynthesis methyltransferase
           COQ5 [Saccharomyces cerevisiae][SP|P49017],
           ubiquinone/menaquinone biosynthesis methyltransferase
           ubiE [Escherichia coli][SP|P27851]; contains Pfam
           profile PF01209: methlytransferase, UbiE/COQ5 family
          Length = 288

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 45/69 (65%), Positives = 53/69 (76%)
 Frame = -2

Query: 220 YDQYSFQVIPVLGQLVAGQWKPYQYLVESIRQFPNQEKFKMMIEDAGFRQVAYENLTFGT 41
           YD YSFQVIP LG+L+AG  + YQYLVES+R+FP QE+F  MI DAGF +V YENL  G 
Sbjct: 220 YDLYSFQVIPNLGELIAGDRESYQYLVESVRRFPPQERFASMIADAGFEKVEYENLVGGV 279

Query: 40  VAIHSGFKI 14
           VAIHS  K+
Sbjct: 280 VAIHSAIKL 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,426,152
Number of Sequences: 28952
Number of extensions: 293969
Number of successful extensions: 827
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)