Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b13f
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe...    77   2e-15
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    28   1.5  
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce...    27   2.6  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   3.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   3.4  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    26   5.9  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   7.9  

>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 305

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
 Frame = +1

Query: 484 VHEVFETVAGKYDLMNDVMSFGIHRVWKDIFMARLAPMPET---NLLDMAGGTGDITFRY 654
           V  VF +VA KYD MND MS GIHR+WK+IF++RL P   T    +LD+AGGTGDI FR 
Sbjct: 65  VKNVFSSVAKKYDEMNDAMSLGIHRLWKNIFVSRLNPGNSTVPMKILDVAGGTGDIAFRI 124

Query: 655 IKYLQN 672
           + +  N
Sbjct: 125 LNHATN 130



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 174 SAANNEERQSKNQTHFGFQTVDENEK 251
           S ++ +   S + THFGF+ V E+EK
Sbjct: 36  STSSKDTDTSSHMTHFGFKDVPEDEK 61


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 269 RIKNEDLCGCLLCYEKSVDIVM*AYNEPTITKDSNYYI 382
           R +N  +C  L+ Y + +DIV   +N P  +KDS  Y+
Sbjct: 788 RRRNMFMCA-LMTYMQELDIVSPIFNSPGKSKDSPMYV 824


>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 563 GKTYSWLAWHQCRKPIYWIWL 625
           G+  SW+ ++   K ++W+WL
Sbjct: 121 GRFLSWVPFYSTSKIVFWLWL 141


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 456 KFETKFIMFDEFYFCLVTI 400
           K+ETK  +F+E  FCLV I
Sbjct: 855 KYETKASIFNELLFCLVYI 873


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 456 KFETKFIMFDEFYFCLVTI 400
           K+ETK  +F+E  FCLV I
Sbjct: 855 KYETKASIFNELLFCLVYI 873


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 463 ILKHIFTVHEVFETVAGKYDLMNDV 537
           +LKHIFT+ E+ +T     DL +D+
Sbjct: 252 VLKHIFTLEELDKTPELLIDLKDDI 276


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/57 (22%), Positives = 23/57 (40%)
 Frame = +3

Query: 66  SKQTNFVMALKRGLFRLAETYRPSRPHIRARLLATQSAANNEERQSKNQTHFGFQTV 236
           S+     + +K G F+  + Y    P I   +   +S   N +      TH GF+ +
Sbjct: 759 SQLRRMAVIVKHGKFKKMDAYVKGAPEIMPSICKPESFPANYQEVLDYYTHNGFRVI 815


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,513
Number of Sequences: 5004
Number of extensions: 60963
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)