Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b13f
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0375 - 43152161-43152262,43152556-43152664,43153433-431535... 77 2e-14
07_01_1017 - 8662144-8662466,8662554-8663535 32 0.50
08_01_1040 + 10551321-10551857,10551924-10552016 31 1.1
06_03_0017 - 15465831-15466043,15466091-15466249,15466664-154669... 31 1.1
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 29 2.6
09_01_0108 - 1695679-1696390,1696640-1696811,1696941-1696962 29 4.6
02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241... 29 4.6
12_01_0542 - 4270190-4270476,4270552-4270738 28 6.1
05_03_0318 - 12292969-12293222,12293305-12293898,12297102-122974... 28 6.1
04_01_0409 - 5409018-5410268 28 6.1
08_02_0132 + 12908995-12909437,12909727-12910211,12910417-129109... 28 8.1
05_01_0429 + 3399266-3399708,3401320-3401382,3403919-3404345,340... 28 8.1
04_01_0588 + 7657510-7657992,7658397-7658843 28 8.1
02_01_0503 + 3669758-3670059,3670351-3670870 28 8.1
01_06_1549 + 38168293-38168385,38168473-38168736 28 8.1
>01_07_0375 -
43152161-43152262,43152556-43152664,43153433-43153504,
43153690-43153834,43153930-43154085,43154557-43154618,
43154695-43155020
Length = 323
Score = 76.6 bits (180), Expect = 2e-14
Identities = 32/64 (50%), Positives = 46/64 (71%)
Frame = +1
Query: 484 VHEVFETVAGKYDLMNDVMSFGIHRVWKDIFMARLAPMPETNLLDMAGGTGDITFRYIKY 663
V VF +VA YDLMND+MS G+HR+WKD +++L P P LD+AGGTGD+ FR ++
Sbjct: 80 VGNVFSSVASSYDLMNDLMSVGLHRLWKDRLISKLNPFPGMKHLDVAGGTGDVAFRALER 139
Query: 664 LQNL 675
+ ++
Sbjct: 140 INSV 143
>07_01_1017 - 8662144-8662466,8662554-8663535
Length = 434
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 514 KYDLMNDVMSFGIHRVWKDIFMARLAPMPETN 609
K DL + F +R WKDIF A + P TN
Sbjct: 145 KIDLQKGIPGFEKNRFWKDIFGAPICKKPRTN 176
>08_01_1040 + 10551321-10551857,10551924-10552016
Length = 209
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/82 (29%), Positives = 36/82 (43%)
Frame = +1
Query: 364 GFKLLHIQIL*INSNQTKIKLVKHYKFSLKFYCILKHIFTVHEVFETVAGKYDLMNDVMS 543
G +LL +Q L +I+ V ++F K Y + + H F K DL +
Sbjct: 64 GSRLLTLQFL---CTLKEIEDVISFRFFHKEYTLTWKGLSTHLGFHDSC-KIDLQKGISG 119
Query: 544 FGIHRVWKDIFMARLAPMPETN 609
F +R W+DI A + P TN
Sbjct: 120 FEKNRFWEDISGALICKKPRTN 141
>06_03_0017 -
15465831-15466043,15466091-15466249,15466664-15466968,
15467083-15467324,15467818-15467825,15467954-15468418,
15468465-15468763,15468968-15469204,15469297-15469519
Length = 716
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 514 KYDLMNDVMSFGIHRVWKDIFMARLAPMPETN 609
K DL + F +R W+DIF A + P TN
Sbjct: 524 KIDLQKGISGFEKNRFWEDIFGAPICKKPRTN 555
>02_05_0877 +
32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 609 IGFRHWCQASHEYVFPYSMYSKGHYIIH*II 517
+G H C A H P+S ++ HY IH +I
Sbjct: 823 VGNNHDCNADHVPGQPFSNFNDSHYYIHPLI 853
>09_01_0108 - 1695679-1696390,1696640-1696811,1696941-1696962
Length = 301
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 514 KYDLMNDVMSFGIHRVWKDIFMARLAPMPETN 609
K DL + F +R W+DI+ A + P TN
Sbjct: 216 KIDLQKGISLFEKNRFWEDIYGAPICKKPRTN 247
>02_03_0049 +
14421408-14421942,14421988-14422842,14423847-14424151,
14424469-14424984
Length = 736
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 514 KYDLMNDVMSFGIHRVWKDIFMARLAPMPETNLLDMAGGTGDITFRYI 657
K DL + F +R W+DI A + P TN D+ T + +++I
Sbjct: 496 KIDLQKGISGFEKNRFWEDISRALICKKPRTN--DIHNPTLRLMYKWI 541
>12_01_0542 - 4270190-4270476,4270552-4270738
Length = 157
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 514 KYDLMNDVMSFGIHRVWKDIFMARLAPMPETN 609
K DL+ + F +R W+DI A + P TN
Sbjct: 95 KIDLLKGISGFEKNRFWEDISGAPICKKPRTN 126
>05_03_0318 -
12292969-12293222,12293305-12293898,12297102-12297415,
12297712-12297893,12297960-12298187,12298234-12298698,
12299393-12299443
Length = 695
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 514 KYDLMNDVMSFGIHRVWKDIFMARLAPMPETN 609
K DL + F +R W+DI A + P TN
Sbjct: 446 KIDLQKGISGFEKNRFWEDISSAPICKKPRTN 477
>04_01_0409 - 5409018-5410268
Length = 416
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 514 KYDLMNDVMSFGIHRVWKDIFMARLAPMPETN 609
K DL + F +R W+DI A + P TN
Sbjct: 70 KIDLQKGISGFEKNRFWEDISSAPICEKPRTN 101
>08_02_0132 +
12908995-12909437,12909727-12910211,12910417-12910988,
12911080-12911211,12912184-12912939
Length = 795
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 514 KYDLMNDVMSFGIHRVWKDIFMARLAPMPETN 609
K DL + F +R W+DI A + P TN
Sbjct: 599 KIDLQKGISRFEKNRFWEDISSAPICKKPRTN 630
>05_01_0429 +
3399266-3399708,3401320-3401382,3403919-3404345,
3404863-3405141
Length = 403
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 362 SLLWAHYTLTLRCLRISHSR 303
S WA Y T+ LR+SHSR
Sbjct: 365 SFTWAEYKTTMYSLRLSHSR 384
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 514 KYDLMNDVMSFGIHRVWKDIFMARLAPMPETN 609
K DL + F R W+DI+ A + P TN
Sbjct: 92 KIDLQKGISGFEKIRFWEDIYGAPICKKPRTN 123
>02_01_0503 + 3669758-3670059,3670351-3670870
Length = 273
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 563 GKTYSWLAWHQCRKPIYWIWLEGQG 637
G+ ++W WH ++P +W L GQG
Sbjct: 101 GQRWNWSPWHVIQRP-WWSPLPGQG 124
>01_06_1549 + 38168293-38168385,38168473-38168736
Length = 118
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 569 TYSWLAWHQCRKP 607
T+ WL W QCR+P
Sbjct: 36 TFEWLCWPQCRQP 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,427,677
Number of Sequences: 37544
Number of extensions: 340043
Number of successful extensions: 849
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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