Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b13f
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)                 38   0.008
SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)                    33   0.29 
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)                   29   3.6  
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            28   6.2  
SB_23840| Best HMM Match : Casein (HMM E-Value=2.8)                    28   6.2  
SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
          Length = 507

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +3

Query: 204 KNQTHFGFQTVDENEKTKKGT 266
           + QTHFGF+TV E EKT+KGT
Sbjct: 39  EKQTHFGFETVTEQEKTEKGT 59


>SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)
          Length = 434

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 123 TYRPSRPHIRARLLATQSAANNEERQS-KNQTHFGFQ 230
           T RPSRP  R+R+    S  +NE +Q  +N +H  +Q
Sbjct: 220 TSRPSRPSRRSRIARNNSDGSNESQQELQNSSHLNYQ 256


>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
          Length = 351

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 510 CYRFEYFVNCEYMF*NTIKFETKFIMFDEFYF 415
           CYR  Y   C     N I+  TKF+ +DE YF
Sbjct: 287 CYRERYAKRCGACH-NLIEGNTKFVAYDEKYF 317


>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/65 (30%), Positives = 37/65 (56%)
 Frame = -1

Query: 377 NSLNPSLLWAHYTLTLRCLRISHSRASNRINLHSLFYCTFLSFFIFVNSLKSKMSLVFAL 198
           +SL+ ++++AH ++   CL     RAS  +N H+   C   SFF+  N L++  ++V+ L
Sbjct: 381 HSLSITIVYAHRSVNYNCL-----RASFFVN-HN---CLRASFFVNHNCLRTPFAIVYLL 431

Query: 197 SLFIV 183
              I+
Sbjct: 432 MRIIL 436


>SB_23840| Best HMM Match : Casein (HMM E-Value=2.8)
          Length = 501

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 105 LFRLAETYRPSRPHIRARLLATQSAANNEERQSKNQTHFGFQTVDENEKTKKGTIE 272
           +F    T++PS    R + + T  A  +E R  KN+   G    +    T K + E
Sbjct: 294 IFIQTVTHKPSEKRSRTKRVKTGHAQTDENRSRKNRVRTGHAQTERETVTHKPSKE 349


>SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 439 YNV*RVLFLFGYYLFIEFEYVIV*ILRYCGLII 341
           +NV  +L LF    +I + Y +V +L  CG+II
Sbjct: 166 FNVVSLLVLFKELKYIYYFYAVVGVLAVCGVII 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,701,611
Number of Sequences: 59808
Number of extensions: 426042
Number of successful extensions: 977
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)