Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b13f
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q (ubi...    78   5e-15
U28730-7|AAA68258.2|  665|Caenorhabditis elegans Abnormal cell l...    32   0.34 
AF275253-1|AAG28037.1|  665|Caenorhabditis elegans LIN-23 protein.     32   0.34 
AF077532-1|AAC26268.1|  301|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z70266-1|CAB61045.1|  364|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF083646-1|AAC32857.1|  364|Caenorhabditis elegans putative pota...    27   9.6  

>L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 5 protein.
          Length = 285

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 34/60 (56%), Positives = 41/60 (68%)
 Frame = +1

Query: 484 VHEVFETVAGKYDLMNDVMSFGIHRVWKDIFMARLAPMPETNLLDMAGGTGDITFRYIKY 663
           VH VF  VA KYDLMND MS G+HR+WKD ++  L        LDMAGGTGDI FR +++
Sbjct: 57  VHHVFANVAKKYDLMNDAMSMGVHRLWKDYYVGGLQVPYNAKCLDMAGGTGDIAFRILRH 116



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 171 QSAANNEERQSKNQTHFGFQTVDENEKTKK 260
           Q  ++N+  +   +THFGF  VDE EK +K
Sbjct: 27  QVNSDNKRSEPGKKTHFGFTDVDEAEKEQK 56


>U28730-7|AAA68258.2|  665|Caenorhabditis elegans Abnormal cell
           lineage protein 23 protein.
          Length = 665

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 129 RPSRPHIRARLLATQSAANNEERQSKNQTHFGFQTVDE 242
           R  RP +  RL+   +A +N  RQ  N  H G   VDE
Sbjct: 621 RQPRPELPVRLMQEMAAFDNMRRQQNNMDHLGGGDVDE 658


>AF275253-1|AAG28037.1|  665|Caenorhabditis elegans LIN-23 protein.
          Length = 665

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 129 RPSRPHIRARLLATQSAANNEERQSKNQTHFGFQTVDE 242
           R  RP +  RL+   +A +N  RQ  N  H G   VDE
Sbjct: 621 RQPRPELPVRLMQEMAAFDNMRRQQNNMDHLGGGDVDE 658


>AF077532-1|AAC26268.1|  301|Caenorhabditis elegans Hypothetical
           protein F40B1.1 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 403 SNQTKIKLVKHYKFS-LKFYCILKHIFTVHEVFETVAGKYDLMN 531
           S + ++K+ K Y+   LK  C+LK I TV E+   VAGK   M+
Sbjct: 251 SMKDQLKIAKQYQLEKLKKACLLK-INTVDEIKAAVAGKLSDMD 293


>Z70266-1|CAB61045.1|  364|Caenorhabditis elegans Hypothetical
           protein C40C9.1 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 501 FEYFVNCEYMF*NTIKFETKFIMFDEFYFCLVT 403
           F   V+  YMF +TI+   K+ +FD +YFC++T
Sbjct: 175 FMVIVSGTYMF-HTIE---KWSIFDAYYFCMIT 203


>AF083646-1|AAC32857.1|  364|Caenorhabditis elegans putative
           potassium channel subunitn2P20 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 501 FEYFVNCEYMF*NTIKFETKFIMFDEFYFCLVT 403
           F   V+  YMF +TI+   K+ +FD +YFC++T
Sbjct: 175 FMVIVSGTYMF-HTIE---KWSIFDAYYFCMIT 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,818,482
Number of Sequences: 27780
Number of extensions: 332762
Number of successful extensions: 824
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)