Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b12f
(397 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 33 0.074
Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical pr... 32 0.13
Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical pr... 32 0.13
U40029-3|AAA81124.1| 269|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z75711-1|CAB00032.1| 196|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z68748-6|CAD27621.1| 88|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr... 27 4.9
AF025471-4|AAB71063.1| 151|Caenorhabditis elegans Hypothetical ... 27 4.9
Z82284-1|CAB05287.1| 226|Caenorhabditis elegans Hypothetical pr... 27 6.4
AF002198-10|AAF99937.1| 471|Caenorhabditis elegans Hypothetical... 27 6.4
Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z68114-2|CAA92158.1| 463|Caenorhabditis elegans Hypothetical pr... 26 8.5
AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical ... 26 8.5
AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical ... 26 8.5
AF016448-14|AAB65960.2| 304|Caenorhabditis elegans Hypothetical... 26 8.5
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ... 26 8.5
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed
with polycystins protein4 protein.
Length = 402
Score = 33.1 bits (72), Expect = 0.074
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +3
Query: 78 LCWLWPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLS 257
LC+LW L T T TT T+ P TT N +TT T+P + T+++PL+
Sbjct: 179 LCYLWVPL--TTTTTTTTTTTTTTSPMNTTTTTVLINGTTTT----TVPTNETTTTVPLN 232
>Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 32.3 bits (70), Expect = 0.13
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 90 WPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSL 248
WP ET TT T+ +P TT+ T T +T T T A T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350
>Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 32.3 bits (70), Expect = 0.13
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 90 WPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSL 248
WP ET TT T+ +P TT+ T T +T T T A T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350
>U40029-3|AAA81124.1| 269|Caenorhabditis elegans Hypothetical
protein F10G7.6 protein.
Length = 269
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 116 EPIDNRPYI-VNPPKDYNPNGNGYEPIDNG 202
EP D P + V PP + PN NG P NG
Sbjct: 239 EPDDPAPPLPVAPPPLHGPNNNGNGPAQNG 268
>Z75711-1|CAB00032.1| 196|Caenorhabditis elegans Hypothetical
protein K02B12.2 protein.
Length = 196
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 144 LILPKITTLMETATNLSTTVHITWTLPKAD 233
+I+ TT +++ T+LS + TW LPK D
Sbjct: 18 VIVNHYTTHVKSTTDLSKCGNCTWVLPKLD 47
>Z68748-6|CAD27621.1| 88|Caenorhabditis elegans Hypothetical
protein F13H10.6 protein.
Length = 88
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +2
Query: 113 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 253
Y+P + P P P GY P G YY QG PY+ P
Sbjct: 3 YQPYNQPPPYTQQPGYPPPGSAGYVPQ-QGGYYPQGQQG-PYYPQQP 47
>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein
C27B7.4 protein.
Length = 1274
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 176 NGYEPIDNGAYYVDPPQGRPYFKPTPFPGA 265
NGY +NG +P Q P P+ FPGA
Sbjct: 1146 NGYPNNNNGGAIGNPQQMLPPRDPSAFPGA 1175
>AF025471-4|AAB71063.1| 151|Caenorhabditis elegans Hypothetical
protein R52.6 protein.
Length = 151
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 105 ETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTL 221
E T ++TT TS + K+ M AT + WTL
Sbjct: 51 EETTEMMTTMETSTMTEKVCPEMPAATACMDLTTLGWTL 89
>Z82284-1|CAB05287.1| 226|Caenorhabditis elegans Hypothetical
protein T27E7.1 protein.
Length = 226
Score = 26.6 bits (56), Expect = 6.4
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +2
Query: 95 NAQGNGYEPIDNRPYIVNPPKDYNPNGNGYE--PIDNGAYYVDPPQGRPYFKPT--PFPG 262
N Q P + P + N P + GY P PP+G Y++P P+
Sbjct: 35 NPQPGASFPPNMNP-VTNGPGSWTQKPGGYNNGPGSGSFKSTKPPRGLVYYQPKNYPYKP 93
Query: 263 ARGGK 277
+GGK
Sbjct: 94 GKGGK 98
>AF002198-10|AAF99937.1| 471|Caenorhabditis elegans Hypothetical
protein F35F10.12 protein.
Length = 471
Score = 26.6 bits (56), Expect = 6.4
Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Frame = +2
Query: 104 GNGYEPIDNRPYIVNPPKDYN--PNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARG 271
G G P P V PP Y P +G DNGA P G PY P P G
Sbjct: 357 GGGVAPAGVAPAGVVPPPGYGFLPMTDG---TDNGAGDTPYPVGPPYPSDVPAPYPSG 411
>Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 104 GNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 223
GN P ++ P +N PK + NG +P+DN YV+ P
Sbjct: 47 GNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86
>Z68114-2|CAA92158.1| 463|Caenorhabditis elegans Hypothetical
protein F17A2.3 protein.
Length = 463
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 99 LKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLS 257
+K LL + +P+ + + T ST H+T+ LP+ T++LP+S
Sbjct: 330 IKSKEHPLLEDQNFTACIPEASPALVPLTTASTPQHLTFKLPQ---TAALPMS 379
>AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 104 GNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 223
GN P ++ P +N PK + NG +P+DN YV+ P
Sbjct: 47 GNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86
>AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical
protein Y81G3A.1 protein.
Length = 243
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 104 GNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 223
GN P ++ P +N PK + NG +P+DN YV+ P
Sbjct: 47 GNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86
>AF016448-14|AAB65960.2| 304|Caenorhabditis elegans Hypothetical
protein F41E6.12 protein.
Length = 304
Score = 26.2 bits (55), Expect = 8.5
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 144 LILPKITTLMETATNLSTTVHITWTLPKADLTSSL 248
LILP +TTL +T STT T T P T S+
Sbjct: 60 LILPPMTTL-PPSTTTSTTAEPTTTTPLKSSTDSV 93
>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
protein Y69A2AR.19 protein.
Length = 1256
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 47 KMKFFMIFVLALLAMANAQGNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDN 199
KM+F + +LAL +AN + I + R +N +P +G+E ++N
Sbjct: 4 KMRFGQLLLLALFGVANGYREQFNTISSSVRQEKINDNHLDSPRSDGHELMEN 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,048,946
Number of Sequences: 27780
Number of extensions: 208068
Number of successful extensions: 561
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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