Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b12f
(397 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26000.2 68418.m03094 glycosyl hydrolase family 1 protein con... 31 0.21
At5g26000.1 68418.m03093 glycosyl hydrolase family 1 protein con... 31 0.21
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 29 1.5
At5g44780.1 68418.m05488 expressed protein low similarity to SP|... 28 2.0
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 28 2.0
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 28 2.0
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL... 28 2.0
At1g72110.1 68414.m08335 expressed protein 28 2.0
At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4) i... 28 2.6
At1g07310.1 68414.m00778 C2 domain-containing protein contains s... 28 2.6
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 27 3.4
At2g33520.1 68415.m04109 expressed protein 27 3.4
At1g31750.1 68414.m03895 proline-rich family protein contains pr... 27 3.4
At2g37780.1 68415.m04639 DC1 domain-containing protein contains ... 27 4.5
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 27 4.5
At1g09070.1 68414.m01012 C2 domain-containing protein / src2-lik... 27 4.5
At5g55540.1 68418.m06919 expressed protein 27 6.0
At4g34440.1 68417.m04894 protein kinase family protein contains ... 26 7.9
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 26 7.9
At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein ... 26 7.9
At1g64960.1 68414.m07363 expressed protein 26 7.9
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati... 26 7.9
>At5g26000.2 68418.m03094 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
identical to Myrosinase precursor (Sinigrinase)
(SP:P37702) [Arabidopsis thaliana]
Length = 456
Score = 31.5 bits (68), Expect = 0.21
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +2
Query: 50 MKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGN---GY-EPIDNGAYYVD 217
MK M+ + LLA+A +G+ + +N P+ N K +N +GN G+ + + AY V+
Sbjct: 1 MKLLMLAFVFLLALATCKGDEFVCEENEPFTCNQTKLFN-SGNFEKGFIFGVASSAYQVE 59
Query: 218 PPQGR 232
+GR
Sbjct: 60 GGRGR 64
>At5g26000.1 68418.m03093 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
identical to Myrosinase precursor (Sinigrinase)
(SP:P37702) [Arabidopsis thaliana]
Length = 541
Score = 31.5 bits (68), Expect = 0.21
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +2
Query: 50 MKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGN---GY-EPIDNGAYYVD 217
MK M+ + LLA+A +G+ + +N P+ N K +N +GN G+ + + AY V+
Sbjct: 1 MKLLMLAFVFLLALATCKGDEFVCEENEPFTCNQTKLFN-SGNFEKGFIFGVASSAYQVE 59
Query: 218 PPQGR 232
+GR
Sbjct: 60 GGRGR 64
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +2
Query: 134 PYIVN--PPKDYNPNGNG-YEPIDNGAYYVDPPQGRPYFKPTPFP 259
PY+ N PP Y+P+ Y+ Y PP PY+ PTP P
Sbjct: 612 PYVYNSPPPPYYSPSPKPTYKSPPPPYVYSSPPP--PYYSPTPKP 654
>At5g44780.1 68418.m05488 expressed protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 723
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 158 DYNP-NGNGYEPIDNGAYYVDPPQGR 232
+Y+P NG Y P G +Y PPQG+
Sbjct: 530 NYSPQNGGHYGPAQFGQWYPGPPQGQ 555
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/57 (29%), Positives = 21/57 (36%)
Frame = +2
Query: 86 AMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF 256
A N Q P + P P NP N Y+ +YYV P +PT F
Sbjct: 790 ASGNTQPQSTMPYNQEPTQAQPNVLANPYDNQYQQPYTDSYYVPQVSHPPMQQPTMF 846
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/57 (29%), Positives = 21/57 (36%)
Frame = +2
Query: 86 AMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF 256
A N Q P + P P NP N Y+ +YYV P +PT F
Sbjct: 792 ASGNTQPQSTMPYNQEPTQAQPNVLANPYDNQYQQPYTDSYYVPQVSHPPMQQPTMF 848
>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
(PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
(EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
{Arabidopsis thaliana}; contains Pfam profiles: PF00614
phospholipase D.active site motif, PF00168 C2 domain
Length = 1083
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 158 DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 259
DY P+ Y+P N Y PP Y +P +P
Sbjct: 101 DYQPSPYPYQPQGNFGAYGPPPPHYSYQEPAQYP 134
>At1g72110.1 68414.m08335 expressed protein
Length = 479
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 347 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 252
N+ I++ I NTL + FS I T H EH+GK
Sbjct: 41 NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73
>At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4)
identical to SUVH4 [Arabidopsis thaliana] GI:13517749;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH4 (SUVH4) GI:13517748
Length = 624
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1
Query: 121 RFVAVSLSVGHSQQSEDENHEEF 53
R VAV ++ G SQ SEDEN EF
Sbjct: 514 RDVAVPMNNGVSQSSEDENAPEF 536
>At1g07310.1 68414.m00778 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 352
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 149 PPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 259
PP + P +P+D Y PQG Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 91 GQRSRKRLRTY*QPPVHR*SSQRLQP*WKRLRTYRQRCILRGP 219
G+RSR R R Y PP R S+ + P + R ++R R P
Sbjct: 154 GRRSRSRSRGYNSPPAKRHQSRSVSP--QDRRYEKERSYSRSP 194
>At2g33520.1 68415.m04109 expressed protein
Length = 97
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +2
Query: 101 QGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPY 238
Q G P+ +P I PP Y P Y+ G PP RPY
Sbjct: 12 QSPGPSPL-YQPIIEAPPPPYPPTRTRYQDYYGGYGQPHPPPLRPY 56
>At1g31750.1 68414.m03895 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 176
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 149 PPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARG 271
PP+ Y P +GY P A Y PP P P +PG G
Sbjct: 44 PPQGYPPPPHGYPP----AAYPPPPGAYP---PAGYPGPSG 77
>At2g37780.1 68415.m04639 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 286
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Frame = +2
Query: 152 PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFK----PTPFPGARGG 274
P+ Y P G GY+P N YY G P + P +P GG
Sbjct: 154 PEPYPPQGGGYQP-QNQNYYPYMNSGSPKTESIGHPETYPPQGGG 197
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +2
Query: 146 NPPKDYN---PNGNGYEPIDNGAYYVDPPQGRP--YFKPTPFPGARG 271
+PP +Y P G P ++ Y P P Y++ TP P RG
Sbjct: 766 SPPPEYQSPPPKGCNDSPSNDHHYQTPTPPSLPPPYYEDTPLPPIRG 812
>At1g09070.1 68414.m01012 C2 domain-containing protein / src2-like
protein, putative similar to cold-regulated gene SRC2
[Glycine max] GI:2055230; contains Pfam profile PF00168:
C2 domain; identical to cDNA src2-like protein
GI:3426059
Length = 324
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +2
Query: 149 PPKDYNPNGN--GYEPIDNGAYYVDPPQGRPYFKP 247
PP Y G GY P G Y PPQG PY P
Sbjct: 217 PPGAYPQQGGYPGYPPQQQGGYPGYPPQG-PYGYP 250
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +2
Query: 113 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG 229
Y + N + P D NP + + P+ N VDP G
Sbjct: 1086 YHDLHNLAQELQVPTDENPEADNHVPVTNELEKVDPSFG 1124
>At4g34440.1 68417.m04894 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 670
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 143 VNPPKDYNPNGNGYEPIDNGAYYVDPPQ 226
VN YN N G P NG YY PQ
Sbjct: 222 VNHMHYYNNNPYGGAPSGNGGYYKGTPQ 249
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 110 GYEPIDNRP-YIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 253
G P+ + P + + PP ++ G P+ G Y PPQ P TP
Sbjct: 263 GNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGGFPYGAPPQQLPSAPGTP 311
>At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 214
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 113 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGAR 268
+EP + P I NP NPN + +++P K TPFP AR
Sbjct: 86 FEPHHHTP-IANP----NPNFSSSSSSSTTTAHLEPSLTNQRSKTTPFPSAR 132
>At1g64960.1 68414.m07363 expressed protein
Length = 1168
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 102 KETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSL 260
K ++L T++ L TL + +L T ++ P +DL+SSLPL+L
Sbjct: 3 KRLRSSLKTSSEEFLSSAVKLTLKSSKPSLKTIINAV--KPSSDLSSSLPLAL 53
>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
identical to peroxiredoxin (Rehydrin homolog)
[Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
and thiol-specific antioxidant) family
Length = 216
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 128 NRPYIVNPPKDYNPNGNGYEPIDNG 202
N P I +P K+ P N +PI+NG
Sbjct: 95 NYPIIADPNKEIIPQLNMIDPIENG 119
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,477,679
Number of Sequences: 28952
Number of extensions: 196535
Number of successful extensions: 584
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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