Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b11r
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    44   2e-05
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    28   1.2  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    27   3.8  
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    27   3.8  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   6.6  

>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 878

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 2/141 (1%)
 Frame = -2

Query: 566  QYNQLFSSVQSEGGDRPPLNGIYENKACIAIFPEDNLWYRASILQYSSTQNRIKVRFVDY 387
            Q   L S + S      P   I       AI   DN  YR  +L+         V   DY
Sbjct: 675  QLETLMSDLGSLKKSFKPSEKINVGMNVAAISALDNAMYRGRVLRCDRENQAADVLLYDY 734

Query: 386  GNIEVISPADVREIKDEWAELPPVTISAKLYNVQLSPDAE--MNSIVKVYTDVLLDKGPF 213
            G++E I   ++  + D + +L P    A+L  VQL P +         V+ ++ ++KG  
Sbjct: 735  GSVEQIPFKNISSLPDTYTKLKPQAQLARLSYVQLPPPSSDYYEDARLVFRELAMNKG-L 793

Query: 212  HTKIIEYENDIPCVELRNDNN 150
              K+  +E ++  V L N ++
Sbjct: 794  VAKVDGHEGNVYSVTLYNPSD 814


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 623 INDPNILELSILHDDKTTSQYNQLFSSVQSEGGDRPP 513
           I  P++L+L   H+D+T S YNQ   S +++  D PP
Sbjct: 241 IETPDLLKLP--HEDRTQSAYNQ--GSEETQNFDGPP 273


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +1

Query: 568 EVVLSSCNILSSNMFGSLIEEILHLNSSIS 657
           +++L +   +++NMFGS+    L LNS+++
Sbjct: 434 QIILKNQENINNNMFGSIHNTTLSLNSTLN 463


>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 431 YSSTQNRIKVRFVDYGNIEVISPADVREIKDEW 333
           Y +T+ + ++RF+DYG  EVI+  D   I++ W
Sbjct: 229 YETTEQQ-RMRFLDYGYSEVIA-EDFLTIEETW 259


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 150 CLDKQNAYKKYRIP*GICL*RQLSLFYFFYQKLAFCY 40
           CL     Y    +P  +CL   L+  Y+F++ L  CY
Sbjct: 492 CLVDSARYSTANVP-PLCLDALLNFIYYFHEHLQPCY 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,144
Number of Sequences: 5004
Number of extensions: 59887
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)