Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b11r
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0071 - 507595-507762,508027-508155,508567-508752,509306-50... 41 0.001
04_03_0813 - 19929562-19929798,19930209-19930580,19930686-199310... 38 0.008
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203... 34 0.14
04_01_0346 - 4536487-4536543,4536714-4536738,4537012-4537285,453... 31 1.3
10_01_0105 + 1287423-1289924 30 1.7
01_06_1815 - 40064351-40064887,40064987-40065634,40065834-400658... 29 3.0
10_08_0795 + 20635038-20635501,20636034-20636335,20636409-20637010 29 3.9
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892... 29 5.2
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273... 28 6.9
11_06_0463 + 23879587-23879771,23879783-23881658 28 9.1
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252... 28 9.1
>08_01_0071 -
507595-507762,508027-508155,508567-508752,509306-509381,
509477-509559,509778-509885,510420-510497,511762-511827
Length = 297
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = -2
Query: 479 AIFPEDNLWYRASILQYSSTQNRIKVRFVDYGNIEVISPADVREIKDEWAE 327
A++ ED WY A+I + T+N V F +GN E + PA+VR +++E A+
Sbjct: 104 AVWSEDGEWYNATIEEL--TENGYYVSFEGWGNKEEVDPANVRSLEEEAAD 152
>04_03_0813 - 19929562-19929798,19930209-19930580,19930686-19931039,
19931120-19931188,19931294-19931479,19932762-19932989,
19933655-19934020,19934154-19934354,19934923-19935093,
19935178-19935285,19935423-19935635,19936093-19936299,
19936485-19936586,19936714-19936902,19937766-19937933
Length = 1056
Score = 37.9 bits (84), Expect = 0.008
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Frame = -2
Query: 482 IAIFPEDNLWYRASIL-QYSSTQN-RIKVRFVDYGNIEVISPADVREIKDEWAELPPVTI 309
+A+F DN W RA I+ + + +V ++DYGN E++ + +R I + +PP+
Sbjct: 841 LALFRCDNSWNRAMIIGECQGVEGPEFEVFYIDYGNQELVPHSCLRPINLSISSIPPLAK 900
Query: 308 SAKLYNVQL-SPDAEMNSIVKVY-TDVLLDKGPFHTKIIE 195
L V++ S + + +Y +LLD G I+E
Sbjct: 901 LCSLAFVKVPSLNDYLGQEAAMYLNSILLDNGREFEAIVE 940
>02_04_0039 -
19118632-19118820,19119018-19119395,19120151-19120345,
19120425-19120502,19120567-19120752,19120828-19121058,
19121137-19121490,19121588-19121785,19121869-19122039,
19122156-19122263,19122362-19122580,19122665-19122871,
19122978-19123196,19123315-19123389,19123749-19123901
Length = 986
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = -2
Query: 482 IAIFPEDNLWYRASILQ-----YSSTQNRIKVRFVDYGNIEVISPADVR 351
+A F DN W RA I+ SS ++ +V ++DYGN EV+ + +R
Sbjct: 785 LAQFSADNSWNRAMIVNGPRGAVSSQDDKFEVFYIDYGNQEVVPYSRIR 833
>04_01_0346 -
4536487-4536543,4536714-4536738,4537012-4537285,
4538206-4538236,4539101-4539176,4539244-4539308,
4539766-4539848,4540489-4541519,4543209-4543507
Length = 646
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 496 SYIPFNGGLSPPSLWTELNNWLYCEVVLSSCNILSSNMFGSLIEE 630
SY+ NG L + W E+V+ CN+L N S +E+
Sbjct: 385 SYMDINGELYLVGAILRVTTWTRYEIVVYKCNLLDENPLWSKVED 429
>10_01_0105 + 1287423-1289924
Length = 833
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +1
Query: 460 LSSGNIAIHALFSYIPFNGGLSPPSLWTELNNWLYCEVVLSS 585
L S N IH SYIPF+G L P L + L N Y ++ +S
Sbjct: 129 LGSMNSLIHLDLSYIPFSGTL--PPLLSNLTNLEYLDLSFTS 168
>01_06_1815 -
40064351-40064887,40064987-40065634,40065834-40065890,
40065921-40065941,40066714-40066941
Length = 496
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +1
Query: 508 FNGGLSPPSLWTELNNWLYCEVVLSSCNILSSNMFGSLIEEILHLNSSISFLGKVI 675
F G +L + N WL VL S ++L N+F SL+ +LH S+S +V+
Sbjct: 389 FAGRFCTNTLGGDGNTWLMYWEVLCSIHLLG-NLFPSLLYHVLHGPISVSHREQVV 443
>10_08_0795 + 20635038-20635501,20636034-20636335,20636409-20637010
Length = 455
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +1
Query: 481 IHALFSYIPFNGGLSP----PSLWTELNNWLYCEVVLSSCNILSSNMFGSLI 624
IH +++Y PF + P+L L+N+ EV+ S C LS+ M L+
Sbjct: 233 IHLIYNYSPFGPASTDDQRWPNLEVHLSNYYLHEVLASVCRKLSNYMLYLLV 284
>03_05_1014 - 29687343-29687410,29688054-29688191,29689246-29689294,
29689623-29689728,29690184-29690332,29690840-29690921,
29691308-29691360,29691644-29691729,29691855-29691909,
29692179-29692579,29693564-29693660,29694191-29694322,
29694426-29694476,29694659-29694751,29694917-29694992,
29695711-29695856,29696009-29696043,29696056-29696107,
29696290-29696401,29696617-29696813,29697456-29697560,
29697667-29697819,29698317-29698424,29698608-29698752,
29699374-29699432,29701397-29701441,29701677-29701730,
29701901-29702113,29702873-29702958,29704492-29704572,
29704670-29704729,29705599-29705644,29706212-29706286,
29706376-29706512,29708306-29708366,29708726-29708743,
29709710-29709743,29709811-29709902,29709997-29710029
Length = 1260
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 512 LNGIYENKACIAIFPEDNLWYRASIL 435
LN + EN++ +AI P NLW SI+
Sbjct: 1131 LNNLSENQSLLAIHPWSNLWLVGSIV 1156
>04_04_1619 -
34825922-34825998,34826109-34826200,34827281-34827399,
34827507-34827734,34827904-34828164,34828258-34828614,
34828803-34828916,34828990-34829063,34829176-34829359,
34829685-34829830,34829951-34830309,34835569-34835789
Length = 743
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +3
Query: 63 KKNKINLVVAKGRCLKECGI 122
K NKINL AK CL EC I
Sbjct: 115 KDNKINLADAKAICLMECPI 134
>11_06_0463 + 23879587-23879771,23879783-23881658
Length = 686
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 473 ILRYTLYSRIYHLMVACHHLHSGPS*IIGYTAKLFYH 583
+LR Y R +M HL+SG + GYT +L Y+
Sbjct: 340 VLRIEGYKRTKMMMATGEHLNSGEFHVGGYTWRLRYY 376
>09_04_0072 +
14323449-14324274,14324351-14324447,14325175-14325277,
14325359-14325412,14325495-14325569,14325597-14325650,
14325687-14325755,14325840-14325923,14326115-14326312,
14326428-14326927,14327011-14327140,14328226-14328317,
14328776-14328954,14329114-14329316,14329398-14329499,
14330047-14330209,14330690-14330979,14331088-14331225,
14331311-14331390,14331510-14331606,14331685-14331814,
14331921-14332162
Length = 1301
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 473 FPEDNLWYRASILQYSSTQNRIKVRFVDYGNIEVISPADVREIKDEWA 330
+P D+ WY + Y R +VR+ D G EV+ D+ + EWA
Sbjct: 77 WPLDDAWYEGRVEGYDVGSRRHRVRY-DDGEEEVV---DLASERYEWA 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,682,874
Number of Sequences: 37544
Number of extensions: 317302
Number of successful extensions: 799
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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