Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b11r
(747 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle... 34 0.087
At2g02570.2 68415.m00197 expressed protein 33 0.20
At2g02570.1 68415.m00196 expressed protein 33 0.20
At5g07350.1 68418.m00839 tudor domain-containing protein / nucle... 33 0.27
At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to... 33 0.27
At3g24900.1 68416.m03122 disease resistance family protein / LRR... 30 1.4
At5g48750.1 68418.m06033 auxin-responsive protein, putative simi... 29 3.3
At3g12140.2 68416.m01511 emsy N terminus domain-containing prote... 29 3.3
At3g12140.1 68416.m01510 emsy N terminus domain-containing prote... 29 3.3
At5g55820.1 68418.m06956 expressed protein 28 5.7
At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplas... 28 5.7
At3g16910.1 68416.m02162 AMP-dependent synthetase and ligase fam... 28 7.6
At1g51800.1 68414.m05837 leucine-rich repeat protein kinase, put... 28 7.6
At5g53890.1 68418.m06703 leucine-rich repeat transmembrane prote... 27 10.0
At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7% ident... 27 10.0
At3g25020.1 68416.m03127 disease resistance family protein conta... 27 10.0
>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 985
Score = 34.3 bits (75), Expect = 0.087
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Frame = -2
Query: 584 DDKTTSQYNQLFSSVQSEGGDRPPLNGIYENKACIAI--FPEDNLWYRASILQ-----YS 426
D K S NQL + D P + K I + F DN W RA I+
Sbjct: 753 DQKVASIQNQLAALSLK---DAPIIGSFNPKKGDIVLAQFSLDNSWNRAMIVNGPRGAVQ 809
Query: 425 STQNRIKVRFVDYGNIEVISPADVREIKDEWAELPPVTISAKLYNVQL 282
S + +V ++DYGN E++ + +R + + P + +L +++
Sbjct: 810 SPEEEFEVFYIDYGNQEIVPYSAIRPVDPSVSSAPGLAQLCRLAYIKV 857
>At2g02570.2 68415.m00197 expressed protein
Length = 300
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = -2
Query: 479 AIFPEDNLWYRASILQYSSTQNRIKVRFVDYGNIEVISPADVREIK 342
A+F +D WY A+I + T N V + ++GN E + P +VR I+
Sbjct: 111 AVFSDDGEWYDATI--EAHTANGYFVAYDEWGNKEEVDPDNVRPIE 154
>At2g02570.1 68415.m00196 expressed protein
Length = 300
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = -2
Query: 479 AIFPEDNLWYRASILQYSSTQNRIKVRFVDYGNIEVISPADVREIK 342
A+F +D WY A+I + T N V + ++GN E + P +VR I+
Sbjct: 111 AVFSDDGEWYDATI--EAHTANGYFVAYDEWGNKEEVDPDNVRPIE 154
>At5g07350.1 68418.m00839 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 991
Score = 32.7 bits (71), Expect = 0.27
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Frame = -2
Query: 584 DDKTTSQYNQLFSSVQSEGGDRPPLNGIYENKA---CIAIFPEDNLWYRASILQ-----Y 429
D K S NQL S + P+ G + K +A F DN W RA I+
Sbjct: 757 DQKIASIQNQLASLSIKDA----PIIGSFNPKRGDIVLAQFSLDNSWNRAMIVTAPRAAV 812
Query: 428 SSTQNRIKVRFVDYGNIEVISPADVREIKDEWAELPPVTISAKLYNVQL 282
S + +V ++DYGN E + + +R I + P + +L +++
Sbjct: 813 QSPDEKFEVFYIDYGNQETVPYSAIRPIDPSVSAAPGLAQLCRLAYIKV 861
>At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to
trithorax-like protein 1 GI:12659210 from [Arabidopsis
thaliana]; characterized in Alvarez-Venegas R,et al,
ATX-1, an Arabidopsis Homolog of Trithorax, Activates
Flower Homeotic Genes.(Curr Biol. 2003 Apr
15;13(8):627-37 PMID: 12699618); contains Pfam profiles
PF00856: SET domain, PF00855: PWWP domain, PF00628,
PHD-finger; identical to cDNA trithorax-like protein 1
(TRX1) GI:12659209
Length = 1062
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 485 CIAIFPEDNLWYRASILQYSSTQNRIKVRFVD 390
C +P D LWY SI+ YS+ + R V++ D
Sbjct: 211 CKVFWPLDALWYEGSIVGYSAERKRYTVKYRD 242
>At3g24900.1 68416.m03122 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 884
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Frame = +1
Query: 496 SYIPFNGGLSPPSLWTELNNWLYCEVVLSSCNILSSNM---FGSLIE-EILHLNSSISFL 663
S+ F+G L+P S EL+N Y + L S N SS++ FG+L + E+L ++S+ SF
Sbjct: 179 SHNHFSGTLNPNSSLFELHNLAYLD--LGSNNFTSSSLPYEFGNLNKLELLDVSSN-SFF 235
Query: 664 GKV 672
G+V
Sbjct: 236 GQV 238
>At5g48750.1 68418.m06033 auxin-responsive protein, putative similar
to auxin-induced protein AIR12 GI:11357190 [Arabidopsis
thaliana];
Length = 255
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +1
Query: 145 KTLLSFRNSTQGMSFSYSIILV*KGPLSNKTSVYTFTIEFISASGLN*TLYNFAEIVTGG 324
+TLL++RNST G +Y+ + P+ + + +F + +SA LN + FA +V
Sbjct: 99 QTLLAYRNSTSGFMRAYTSSINGYTPMLQEGPL-SFRVTQLSAEYLNREMTIFATMVWPS 157
Query: 325 NS 330
N+
Sbjct: 158 NT 159
>At3g12140.2 68416.m01511 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 327
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 473 FPEDNLWYRASILQYSSTQNRIKVRFVDYGNIEVISPADVREIKDE 336
+PEDN +Y A I QY++ + R + + + E D++EI E
Sbjct: 145 WPEDNHFYEAIITQYNADEGRHALVYDIHAANETWEWVDLKEIPPE 190
>At3g12140.1 68416.m01510 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 327
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 473 FPEDNLWYRASILQYSSTQNRIKVRFVDYGNIEVISPADVREIKDE 336
+PEDN +Y A I QY++ + R + + + E D++EI E
Sbjct: 145 WPEDNHFYEAIITQYNADEGRHALVYDIHAANETWEWVDLKEIPPE 190
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = -2
Query: 446 ASILQYSSTQNRIKVRFVDYGNIEVISPADVREIKDEWAELPPVTISAKLYNVQLSPDAE 267
A +Q S +Q + + FV+ +IE+ S V++ DE L PVT++ + V+ + E
Sbjct: 609 AGAIQDSISQIEL-LSFVESSSIELQSRHSVKQSDDESVLLKPVTVNGEALLVEEDNNGE 667
Query: 266 MNSI 255
I
Sbjct: 668 STEI 671
>At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplasmic
reticulum-type (ACA6) (ECA3) nearly identical to
SP|Q9SY55 Calcium-transporting ATPase 3, endoplasmic
reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
contains InterPro Accession IPR006069: Cation
transporting ATPase
Length = 998
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 512 LNGIYENKACIAIFPEDNLWYRASIL 435
LN + EN++ + I P NLW SI+
Sbjct: 899 LNNLSENQSLLVITPRSNLWLVGSII 924
>At3g16910.1 68416.m02162 AMP-dependent synthetase and ligase family
protein similar to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501; identical to cDNA adenosine monophosphate
binding protein 7 AMPBP7 (AMPBP7) GI:20799722
Length = 569
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -2
Query: 431 YSSTQNRIKVRFVDYGNIEVISPADVREIKDEWAELPPVTISAKL 297
+S Q +V YG E P+ V K EW LPP T AKL
Sbjct: 330 FSMNQKGFRVAHT-YGLSETYGPSTVCAWKPEWDSLPPET-QAKL 372
>At1g51800.1 68414.m05837 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 894
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 326 LPPVTISAKLYNVQLSPDAEMNSIVKVYTDVLLD-KGPFHTKIIEYENDIPCVEL 165
LPP+ + ++Y+V L P E + + D +++ K + I++E D PCV L
Sbjct: 341 LPPLLNAMEIYSVNLLPQQETD---RKEVDAMMNIKSAYGVNKIDWEGD-PCVPL 391
>At5g53890.1 68418.m06703 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1036
Score = 27.5 bits (58), Expect = 10.0
Identities = 47/170 (27%), Positives = 67/170 (39%), Gaps = 9/170 (5%)
Frame = +1
Query: 127 VSILFIKTLLSFRNSTQGMSFSYSIILV*KGPLSNKTSVYTFTIEFISASGLN*TLYNFA 306
V+I +K L+ + M+ S I L K S+ Y F + LN N
Sbjct: 492 VAITELKNLIRLNGTASQMTDSSGIPLYVKRNKSSNGLPYNQVSRFPPSIYLNNNRLNGT 551
Query: 307 EIVTGGNSAHSSLISLTSAGEITSMLP*ST----NLTLI-LF*VELYCSIEARYHKL--- 462
+ G ++ L S T +P S NL ++ L LY SI + L
Sbjct: 552 ILPEIGRLKELHMLDL-SRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFL 610
Query: 463 SSGNIAIHALFSYIPFNGGL-SPPSLWTELNNWLYCEVVLSSCNILSSNM 609
S ++A + L IP G S P E N L C + S C++L SNM
Sbjct: 611 SRFSVAYNRLTGAIPSGGQFYSFPHSSFEGNLGL-CRAIDSPCDVLMSNM 659
>At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7%
identical to F-box protein family, AtFBL4 (GP:21536497)
[Arabidopsis thaliana]; similar to grr1 GI:2407790 from
[Glycine max]
Length = 610
Score = 27.5 bits (58), Expect = 10.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 327 ITSCNYFGEII*CSIESGCRN 265
+ C+ G+I CSI GCRN
Sbjct: 405 LVDCSGIGDIAMCSIAKGCRN 425
>At3g25020.1 68416.m03127 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 890
Score = 27.5 bits (58), Expect = 10.0
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = +1
Query: 496 SYIPFNGGLSPPSLWTELNNWLYCEVVLSSCNILSSNM---FGSLIE-EILHLNSSISFL 663
SY F+G L+P S EL++ +Y L N SS++ FG+L + E+L ++S+ SF
Sbjct: 178 SYNHFSGILNPNSSLFELHHLIYLN--LRYNNFTSSSLPYEFGNLNKLEVLDVSSN-SFF 234
Query: 664 GKV 672
G+V
Sbjct: 235 GQV 237
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,897
Number of Sequences: 28952
Number of extensions: 281448
Number of successful extensions: 692
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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