Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b11f
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0261 - 21919017-21920594 36 0.025
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836... 34 0.075
03_04_0142 - 17656751-17657554 33 0.23
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 31 0.53
10_08_0252 - 16191136-16191279,16191639-16191750,16191833-161919... 30 1.2
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 29 2.1
12_01_0961 + 9566730-9566998,9567096-9567187,9567294-9567427,956... 29 2.8
10_07_0098 - 12844631-12845074,12845329-12846570 29 2.8
03_05_1082 - 30239385-30239561,30239937-30240009,30240382-302404... 29 2.8
01_01_0475 + 3500385-3500880,3501078-3501154,3501851-3502019,350... 29 2.8
09_04_0706 + 19627024-19627380,19629945-19629976,19630657-196307... 29 3.7
05_03_0471 - 14455543-14455650,14455925-14456002,14456121-144562... 28 5.0
08_02_1334 - 26224546-26225337 28 6.5
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704... 28 6.5
02_04_0653 - 24747959-24748276,24748847-24748959,24749815-247500... 28 6.5
12_02_1012 - 25281820-25281987,25282337-25282409,25283370-252834... 27 8.7
>09_06_0261 - 21919017-21920594
Length = 525
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 356 PNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIECRICQKCMEIDSSE 535
P CS+ +F + + + +F CGH +C C H P+ C+ K +E +SSE
Sbjct: 225 PGCSRAVEF-VGGGDGEESSEVFCSCGHGLCWRCGEEA---HRPVSCKTVAKWVEKNSSE 280
Query: 536 S 538
S
Sbjct: 281 S 281
>08_02_1329 -
26182762-26183007,26183149-26183249,26183533-26183602,
26183692-26183895,26186435-26186941,26188672-26188677
Length = 377
Score = 34.3 bits (75), Expect = 0.075
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 398 ISKINLPLFLECGHTVCENCIRNIVKFHEPIECRICQKCMEIDS 529
++K++ P CGH CE CI+ +K + +C C+K + I S
Sbjct: 323 LNKLDKPSTTNCGHIFCEKCIQAWLKAQK--KCPTCRKSLGIKS 364
>03_04_0142 - 17656751-17657554
Length = 267
Score = 32.7 bits (71), Expect = 0.23
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 410 NLPLFLECGHTVCENCI 460
N+P L CGHT+C+NCI
Sbjct: 57 NVPYVLWCGHTMCKNCI 73
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 329 IDLETKKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIECRIC 505
I+ K CP C + Y F L S L CGHT+ C ++K H+ C IC
Sbjct: 126 IENSMKNNCPICYE-YLFDSLRETS------VLRCGHTMHLQCFHEMLK-HDKFSCPIC 176
>10_08_0252 -
16191136-16191279,16191639-16191750,16191833-16191924,
16192564-16192641,16192764-16192796,16193712-16193771,
16193912-16193999,16194155-16194180
Length = 210
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 425 LECGHTVCENCIRNIVKFHEPIECRICQK 511
L CGHT+ C+ N+++ H C +C +
Sbjct: 107 LHCGHTIHLECL-NVMRAHHHFACPVCSR 134
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 425 LECGHTVCENCIRNIVKFHEPIECRICQK 511
L+CGHT+ C +V+ H C IC K
Sbjct: 181 LDCGHTMHMECFSEMVE-HNKYTCPICSK 208
>12_01_0961 +
9566730-9566998,9567096-9567187,9567294-9567427,
9567542-9567591,9569026-9569100,9569179-9569734
Length = 391
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEPIEC-RICQKCME-IDSSESC 541
P CGH+ C C++ H +C + C KC + I +S SC
Sbjct: 174 PSTTPCGHSFCMKCLK-----HAAAKCGKRCPKCRQLISNSRSC 212
>10_07_0098 - 12844631-12845074,12845329-12846570
Length = 561
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +2
Query: 170 ARRPLVFVENTIQTFLFSQIKHKEIDLLTIRKMFPLK*SKVIAKIFKVVKMEPIDLETKK 349
AR+P + V ++ + + +H E+DL R + + +++AK+ +V M I T+
Sbjct: 88 ARKPWIAVG--MRNVDYKRARHFEVDLSAFRNILEIDRERMVAKVEPLVNMGQI---TRA 142
Query: 350 CCP 358
CP
Sbjct: 143 TCP 145
>03_05_1082 -
30239385-30239561,30239937-30240009,30240382-30240432,
30240521-30240978,30241099-30241435,30241836-30241935,
30243880-30244003
Length = 439
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 428 ECGHTVCENCIRNIVKFHEPIECRICQKCMEIDSSE 535
EC HT C+ CI + E C +C + D E
Sbjct: 37 ECLHTFCKECIMEKIDDEEVDHCPVCNIDLGCDPEE 72
>01_01_0475 +
3500385-3500880,3501078-3501154,3501851-3502019,
3502385-3502473,3502601-3502765,3502841-3502918,
3503087-3503190,3503317-3503422
Length = 427
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 404 KINLPLFLECGHTVCENCIRNIVKFHEPIECRICQ 508
K++ P+ L C H CE+C+ F C +C+
Sbjct: 372 KMHTPILLRCKHIFCEDCVSE--WFERERTCPLCR 404
>09_04_0706 +
19627024-19627380,19629945-19629976,19630657-19630751,
19632116-19632281,19632881-19632938,19633014-19633061,
19633274-19633464,19633580-19633702,19635174-19635289,
19635841-19635924,19636009-19636259,19636438-19636647
Length = 576
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEPIECRIC 505
P L CGH C C+ ++ E +EC+ C
Sbjct: 416 PSVLNCGHVYCMPCLTSV--GGEELECQFC 443
>05_03_0471 -
14455543-14455650,14455925-14456002,14456121-14456285,
14457151-14457261,14457863-14458024,14458462-14458538,
14459526-14460177
Length = 450
Score = 28.3 bits (60), Expect = 5.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 404 KINLPLFLECGHTVCENCI 460
K+++P+ L C H CE+C+
Sbjct: 429 KMHVPVLLRCKHIFCEDCV 447
>08_02_1334 - 26224546-26225337
Length = 263
Score = 27.9 bits (59), Expect = 6.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 422 FLECGHTVCENCIRNIV 472
F+ CGHT C C R ++
Sbjct: 227 FIPCGHTFCRTCARELL 243
>03_02_0275 +
7042433-7042732,7042864-7043140,7043751-7044231,
7044943-7045491,7045556-7045680,7045824-7045966
Length = 624
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 425 LECGHTVCENCIRN--IVKFHEPIECRICQKCMEIDSSESC 541
++CGH C C IVK +E RI KCM + + C
Sbjct: 183 MDCGHNYCNECWTGYFIVKINEGQSRRI--KCMALKCNTIC 221
>02_04_0653 -
24747959-24748276,24748847-24748959,24749815-24750015,
24750097-24750267,24750354-24750425,24751515-24751543,
24752161-24752303
Length = 348
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEPIECRICQKCMEIDSSESCL 544
P L CGH C +C+ ++ ++C++C D CL
Sbjct: 131 PAVLNCGHVYCMSCLSSL--DDGALKCQVCGGLHPGDFPNVCL 171
>12_02_1012 -
25281820-25281987,25282337-25282409,25283370-25283420,
25283523-25283932,25284083-25284413,25285340-25285439,
25287091-25287370
Length = 470
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 428 ECGHTVCENCIRNIVKFHEPIECRICQ 508
EC HT C CI + E C +C+
Sbjct: 89 ECLHTFCRKCIYKKINDEELEHCPVCK 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,132,605
Number of Sequences: 37544
Number of extensions: 259686
Number of successful extensions: 579
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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