Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b11f
(604 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14) 43 2e-04
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 37 0.011
SB_52478| Best HMM Match : NHL (HMM E-Value=1e-27) 35 0.058
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08) 33 0.13
SB_43479| Best HMM Match : GLTT (HMM E-Value=0.66) 33 0.18
SB_33464| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0019) 31 0.54
SB_58313| Best HMM Match : UPF0180 (HMM E-Value=3.4) 31 0.95
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14) 31 0.95
SB_2351| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-07) 31 0.95
SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08) 31 0.95
SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012) 31 0.95
SB_36856| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-05) 30 1.3
SB_58465| Best HMM Match : zf-B_box (HMM E-Value=0.00022) 30 1.7
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12) 30 1.7
SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12) 30 1.7
SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 29 2.9
SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 29 2.9
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23) 29 2.9
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 29 2.9
SB_54663| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05) 29 3.8
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 29 3.8
SB_32032| Best HMM Match : PAN (HMM E-Value=0.029) 28 5.1
SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45) 28 5.1
SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 28 5.1
SB_45821| Best HMM Match : zf-B_box (HMM E-Value=1.1e-12) 28 6.7
SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08) 28 6.7
SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17) 28 6.7
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_10859| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_42856| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 28 6.7
SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_37345| Best HMM Match : zf-B_box (HMM E-Value=1.3e-23) 27 8.8
SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15) 27 8.8
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_24680| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
Length = 856
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 368 QPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHE-PIECRICQKCMEI 523
Q + +I T K+++PL LECGHT C++CI + + + + C CQ ++
Sbjct: 390 QTFSIEISKT-KKVHIPLLLECGHTYCDSCIIKLSRLQKTQVACPECQHVTQL 441
>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
Length = 843
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 353 CPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFH-EPIECRICQKCMEIDS 529
CP C Y T +P L+C HT C CI I + + +EC C+ + S
Sbjct: 330 CPLCYTAY-----GTGYPQRIPRILDCSHTFCTECIMKIKELQGDVVECPTCKLRTLLTS 384
Query: 530 SESCL 544
S CL
Sbjct: 385 SVDCL 389
>SB_52478| Best HMM Match : NHL (HMM E-Value=1e-27)
Length = 1387
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 350 CCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIECRICQKC 514
CCP CS+P++ P L C HT C +C++ IV+ C KC
Sbjct: 658 CCPICSRPFKS-----------PKILPCLHTYCSDCVKEIVRSRLGKLTLQCPKC 701
>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
Length = 1631
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 416 PLFL-ECGHTVCENCIRNIVKFHEP-IECRICQ 508
PL L CGH+VC C++N+ K + P + C +C+
Sbjct: 33 PLVLPSCGHSVCLQCLQNMTKRNPPSLLCPVCR 65
>SB_43479| Best HMM Match : GLTT (HMM E-Value=0.66)
Length = 161
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 301 NLQSCKNGTHRSRNKKMLSQLQPTLSISNTFNYIKDQLTIVPGMWSHC 444
+L S + R K +S LQ T+ IS TF+YI QL + +S C
Sbjct: 32 SLTSDMHEASRGLQTKQISLLQRTVHISKTFSYISQQLFSINRPFSQC 79
>SB_33464| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0019)
Length = 413
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +2
Query: 335 LETKKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIECRICQKC 514
L+ + CCP C++ ++ + LP+ C H VC +C++ + I+C IC+K
Sbjct: 16 LQEEICCPICTEIFE-------TPKCLPV---CAHNVCLSCLKKMKIEQGFIKCPICRKK 65
Query: 515 MEIDSSESCL 544
+I + L
Sbjct: 66 TKITNPAESL 75
>SB_58313| Best HMM Match : UPF0180 (HMM E-Value=3.4)
Length = 478
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 369 NLINFKYFQLYQRSTYHCSWNVVT-LFVKIVLETLSSFTNRLNAGYARNVW 518
NL Y ++Y+R C + L VK+ LE + F + L A Y R VW
Sbjct: 377 NLYPIGYVKVYERG---CPIPFIPELHVKVYLENIQLFLSPLTADYVRRVW 424
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 30.7 bits (66), Expect = 0.95
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEPIECRI-CQKCME 520
P L C HT C +C+ ++V+ + EC + C +C E
Sbjct: 27 PRVLACLHTYCRHCLESLVEHSK--ECTVSCPQCRE 60
>SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)
Length = 594
Score = 30.7 bits (66), Expect = 0.95
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEPIECRI-CQKCME 520
P L C HT C +C+ ++V+ + EC + C +C E
Sbjct: 26 PRVLACLHTYCRHCLESLVEHSK--ECTVSCPQCRE 59
>SB_2351| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-07)
Length = 137
Score = 30.7 bits (66), Expect = 0.95
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 317 KMEPIDLETKKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIEC 496
K P + E K CP C + +S + + ECGH +C++C + I + EP +C
Sbjct: 44 KKPPFE-ERKHLCPVCEDIF-------VSPVQIK---ECGHRLCQHCYKTIWRSPEP-KC 91
Query: 497 RIC 505
C
Sbjct: 92 PKC 94
>SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08)
Length = 599
Score = 30.7 bits (66), Expect = 0.95
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEPIECRI-CQKCME 520
P L C HT C +C+ ++V+ + EC + C +C E
Sbjct: 36 PRVLACLHTYCRHCLESLVEHSK--ECTVSCPQCRE 69
>SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)
Length = 450
Score = 30.7 bits (66), Expect = 0.95
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEPIE 493
P+ L CGHT+C+ C+ + K P +
Sbjct: 28 PISLACGHTICKACLSQLHKTQCPFD 53
>SB_36856| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-05)
Length = 406
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 431 CGHTVCENCIRNIVKFHEP--IECRICQKCMEI 523
C H VC C+ I K + +EC IC+ EI
Sbjct: 38 CAHNVCRECLEKITKRNSIRFVECPICRARSEI 70
>SB_58465| Best HMM Match : zf-B_box (HMM E-Value=0.00022)
Length = 476
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 350 CCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCI 460
CC C P+ +T S+ +P L CGHT C C+
Sbjct: 140 CCSVCYNPFH----ATESQA-IPRNLNCGHTYCTGCL 171
>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
Length = 654
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 416 PLFLECGHTVCENCI 460
P L CGHTVCE C+
Sbjct: 111 PCTLPCGHTVCEKCL 125
>SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)
Length = 549
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHE-PIECRICQKCMEIDSSE 535
P L C H++C+ C+++I + E I C +C +E E
Sbjct: 31 PRLLPCLHSLCKKCLKDIEQAQEGAIACPVCLTDVECHLEE 71
>SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 410 NLPLFLECGHTVCENCIRNIVKFHEPI-ECRICQ 508
N P L C H+ C+NC+ ++ E + C CQ
Sbjct: 25 NNPKVLPCLHSFCQNCLDKSIRSQERVLVCPTCQ 58
>SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 604
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEPIECRICQKCME 520
P L C HT C +C+ ++V+ H C +C E
Sbjct: 27 PRVLACLHTYCRHCLESLVE-HSQERTVSCPQCRE 60
>SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 462
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEPIECRICQKCME 520
P L C HT C +C+ ++V+ H C +C E
Sbjct: 27 PRVLACLHTYCRHCLESLVE-HSQERTVSCPQCRE 60
>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
Length = 877
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 425 LECGHTVCENCIRNIVKFHEPI--ECRICQKCMEIDS 529
L C HT C CI +I+ + + C C + + +DS
Sbjct: 158 LPCLHTYCRRCIEDIILHRQSVRAHCPSCNREIPLDS 194
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 332 DLETKKCCPNCSQ-PYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIECRICQ 508
D E ++ N + YQ + + + P+ L CGH C CI+ + +C IC+
Sbjct: 52 DTEEEEVLQNIFELDYQPDCPVCLQQASYPVRLPCGHMFCFLCIKGVAL--RSRKCAICR 109
Query: 509 KCMEIDSSESCLLV 550
+ + D + LV
Sbjct: 110 QPISPDYLDKPTLV 123
>SB_54663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +2
Query: 344 KKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNI 469
++ CP C+ P + + +++ + CG+ C C+R+I
Sbjct: 247 RRLCPRCTSPSNYTQVQNVAQC---ICERCGNEFCPYCLRDI 285
>SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)
Length = 576
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +2
Query: 431 CGHTVCENCIRNIVKFHEP--IECRICQKCMEI 523
C H VC C+ I + +EC IC+ EI
Sbjct: 38 CAHNVCRECLEKITARNSSRFVECPICRARSEI 70
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +2
Query: 431 CGHTVCENCIRNIVKFHE-PIECRI--CQKCM---EIDSSESCLLVXE 556
CGH C C+ N+++ + P+ C C + ++D+ + C +V +
Sbjct: 1967 CGHVYCRGCVTNLIEAKQFPLTCAYEDCSTLLAIHDVDNLKECDIVND 2014
>SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)
Length = 610
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -2
Query: 351 HFFVSRSMGSIFTTLKILAITLDYFKGNI--LRIVNKSISLCFI*LNRNVC 205
+FFV++S TL + + DYFKG I L+I N ++ I L +++C
Sbjct: 121 NFFVAKSDNKRPITLGANSRSTDYFKGRIACLQIYNSELTGTEIELVKHIC 171
>SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)
Length = 784
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 404 KINLPLFLECGHTVCENCIRNIVKFHEPIEC--RICQKC 514
+ N P L C H+ C++CI + + E +C IC C
Sbjct: 68 RFNKPKLLHCLHSFCQSCIEGLARKTED-DCLELICPVC 105
>SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 510
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 307 QSCKNGTHRSRNKKMLSQLQPTLSISNTFNYIKDQLTIVPGM 432
+ C+ +SRN + LS PT+ S T + IK LTI G+
Sbjct: 93 KECEEQLKKSRNPENLSDSLPTMYSSVTVSVIKKFLTIKFGI 134
>SB_45821| Best HMM Match : zf-B_box (HMM E-Value=1.1e-12)
Length = 379
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 407 INLPLFLECGHTVCENCIRNIVKFHE---PIECRICQKCMEI 523
+N P+ L C ++C +C + + H + CR+C + I
Sbjct: 34 MNGPVLLPCLDSICRSCCQKTAQKHGDTWTVPCRLCDSLVRI 75
>SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)
Length = 584
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEPIECRICQKCME 520
P L C HT C +C+ ++ + H + C +C E
Sbjct: 26 PRVLACLHTYCRHCLESLAE-HSQGDSISCPQCRE 59
>SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17)
Length = 605
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 407 INLPLFLECGHTVCENCIRNIVKFHE---PIECRICQKCMEI 523
+N P+ L C ++C +C + + H + CR+C + I
Sbjct: 34 MNGPVLLPCLDSICRSCCQKTAQKHGDTWTVPCRLCDSLVRI 75
>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEP-----IECRICQKCMEIDSSE 535
P+ L C H+ C C++ ++ H+ ++C C+ MEI +S+
Sbjct: 30 PMLLRCYHSFCLRCVQELL--HQSGEKGVVKCPQCRTEMEIPNSD 72
>SB_10859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 428 ECGHTVCENCIRNIVKFH--EPIECRICQKCMEI 523
+C H +C C+ I++ E EC IC+ + +
Sbjct: 40 KCAHNICRECLLGIIEKAQLERFECPICRAIVAV 73
>SB_42856| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 357 GQHFFVSRSMGSIFTTLKILAITLDY 280
GQ+FF+ + +IF TL I+ + LDY
Sbjct: 20 GQYFFLYAWLFTIFITLVIVTVYLDY 45
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 372 LIN-FKYFQLYQRSTYHCSWNVVTLFVKIVLETLSSFTNRLNAGYARNVWKLIH 530
LIN + Y R Y+ S + LFVK+ + +++ N + +NVW+ H
Sbjct: 377 LINAIRMINSYSRY-YNTSERMTALFVKVTNQMITACKNYITEHGYKNVWEYTH 429
>SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 606
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 338 ETKKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENC 457
+ + C +C Q YQ ++ T + NL E H VC+ C
Sbjct: 197 DARFCSYDCKQDYQIRVSGTSVRRNL---FEAEHGVCQLC 233
>SB_37345| Best HMM Match : zf-B_box (HMM E-Value=1.3e-23)
Length = 581
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIV 472
P L C HT C+ C+ N+V
Sbjct: 155 PRLLPCLHTFCKRCLENLV 173
>SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15)
Length = 629
Score = 27.5 bits (58), Expect = 8.8
Identities = 24/87 (27%), Positives = 35/87 (40%)
Frame = +2
Query: 275 LK*SKVIAKIFKVVKMEPIDLETKKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCEN 454
LK + +I I V+ + D + K C +C Q + N EC H VCE
Sbjct: 191 LKVNFMINSILSVLLLTSEDSKKKPACESCDSGEPAQ-----GRCN-----ECDHFVCEQ 240
Query: 455 CIRNIVKFHEPIECRICQKCMEIDSSE 535
CI +F P++ EI S +
Sbjct: 241 CISTHKRF-RPVQHHTILSLDEIKSGK 266
>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1511
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 431 CGHTVCENCIRNI--VKFHEPIECRICQKCMEI 523
CG C C N +++ + CR+C+ C EI
Sbjct: 1322 CGGIYCNACSHNKAPLEYRDGKLCRVCRSCREI 1354
>SB_24680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 616
Score = 25.0 bits (52), Expect(2) = 9.7
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +2
Query: 455 CIRNIVKFHEPIECRICQKCMEIDSSESCL 544
C+ ++++ P+E RIC C S L
Sbjct: 224 CMFKVLEWFNPVESRICIDCSAYSESTKLL 253
Score = 20.6 bits (41), Expect(2) = 9.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2
Query: 428 ECGHTVCENCI 460
+C H VC +CI
Sbjct: 197 DCVHIVCADCI 207
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,273,967
Number of Sequences: 59808
Number of extensions: 342466
Number of successful extensions: 877
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -