Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b11f
         (604 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    32   0.016
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    25   1.4  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    25   1.4  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 31.9 bits (69), Expect = 0.016
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +2

Query: 353 CPNCSQPYQFQILSTISKINLPLFLEC--GHTVCENCIRNIVKFHEPIECR---ICQKCM 517
           CP C++ +   +     + ++    E    H +C NC+R   K H   ECR   +CQ+C 
Sbjct: 344 CPLCNEQHPLHVCERFERASVINREEIVRKHGLCFNCLR---KGHSARECRSTYVCQQCK 400

Query: 518 EIDSSESC 541
               S+ C
Sbjct: 401 RKHHSKLC 408


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 416 PLFLECGHTVCENCIRNIVKFHEPIECRIC 505
           P+  +C H  CE C   + ++ +   C IC
Sbjct: 257 PIVTKCKHYFCERCA--LAQYKKSSRCAIC 284


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 416 PLFLECGHTVCENCIRNIVKFHEPIECRIC 505
           P+  +C H  CE C   + ++ +   C IC
Sbjct: 257 PIVTKCKHYFCERCA--LAQYKKSSRCAIC 284


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,512
Number of Sequences: 2352
Number of extensions: 15699
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58450473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)