Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b11f
(604 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 42 4e-04
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 41 5e-04
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 33 0.11
At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger) fa... 33 0.15
At3g29270.2 68416.m03675 expressed protein 33 0.19
At3g29270.1 68416.m03674 expressed protein 33 0.19
At1g69330.1 68414.m07954 zinc finger (C3HC4-type RING finger) fa... 33 0.19
At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger) fa... 31 0.78
At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger) fa... 30 1.0
At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger) fa... 30 1.0
At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger) fa... 30 1.0
At5g01520.2 68418.m00066 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa... 29 2.4
At5g13530.1 68418.m01562 protein kinase family protein / ankyrin... 29 3.1
At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger) fa... 28 5.5
At5g18650.1 68418.m02214 zinc finger (C3HC4-type RING finger) fa... 28 5.5
At5g08730.1 68418.m01037 IBR domain-containing protein contains ... 28 5.5
At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa... 28 5.5
At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa... 28 5.5
At5g57710.1 68418.m07214 heat shock protein-related contains sim... 27 7.2
At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger) fa... 27 7.2
At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger) fa... 27 7.2
At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger) fa... 27 7.2
At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger) fa... 27 7.2
At5g38895.1 68418.m04704 zinc finger (C3HC4-type RING finger) fa... 27 9.6
At3g11340.1 68416.m01379 UDP-glucoronosyl/UDP-glucosyl transfera... 27 9.6
At1g62150.1 68414.m07011 mitochondrial transcription termination... 27 9.6
At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger) fa... 27 9.6
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 353 CPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNI-VKFHEPIECRIC 505
CP C Q Y + ST+ ++ L CGHT CE C+ N+ KF + I C C
Sbjct: 6 CPVCLQSYDGE--STVPRV-----LACGHTACEECLTNLPKKFPDTIRCPAC 50
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 41.1 bits (92), Expect = 5e-04
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEPIECRICQKCMEIDSSESCLLVXE 556
P+ L CGH CE C+ ++ + E I+C+ C C + CL++ +
Sbjct: 202 PVVLNCGHVYCEGCVVDMAEESEKIKCQECNVCDPRGFPKVCLILEQ 248
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 371 PYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIECRICQ 508
P QF + + P+ L CGH C C+ + C IC+
Sbjct: 21 PDQFLCCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHCPICR 66
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 33.5 bits (73), Expect = 0.11
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 338 ETKKC--CPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIECRIC 505
E K C CP C+ P F+ +TIS EC HT C +CIRN C +C
Sbjct: 9 EVKPCLACPICTNP--FKDATTIS--------ECLHTFCRSCIRNKFINERVNACPVC 56
>At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 276
Score = 33.1 bits (72), Expect = 0.15
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +2
Query: 329 IDLETKKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIECRICQ 508
I+ TK CP C Y++ + ++ ++ ++CGHT+ +C ++ ++ C IC
Sbjct: 151 IENSTKNSCPVC---YEY-LFDSVKAAHV---MKCGHTMHMDCFEQMINENQ-YRCPICA 202
Query: 509 KCMEIDSSES 538
K M +D S S
Sbjct: 203 KSM-VDMSPS 211
>At3g29270.2 68416.m03675 expressed protein
Length = 263
Score = 32.7 bits (71), Expect = 0.19
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 410 NLPLFLECGHTVCENCI 460
N+P L CGHT+C+NCI
Sbjct: 66 NVPYVLWCGHTMCKNCI 82
>At3g29270.1 68416.m03674 expressed protein
Length = 263
Score = 32.7 bits (71), Expect = 0.19
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 410 NLPLFLECGHTVCENCI 460
N+P L CGHT+C+NCI
Sbjct: 66 NVPYVLWCGHTMCKNCI 82
>At1g69330.1 68414.m07954 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 270
Score = 32.7 bits (71), Expect = 0.19
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 410 NLPLFLECGHTVCENCI 460
N+P L CGHT+C+NC+
Sbjct: 57 NVPYVLWCGHTLCQNCV 73
>At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 425
Score = 30.7 bits (66), Expect = 0.78
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEPIECRICQ 508
P+ CGH C +C+ ++ E EC +C+
Sbjct: 151 PVVTNCGHLYCWSCLYQWLQVSEAKECPVCK 181
>At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 182
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +2
Query: 326 PIDLETKKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIECRIC 505
P++ E K CP C P+ Q +ST +CGH C+ CI+N + +C C
Sbjct: 119 PVE-EPKFSCPICLCPFT-QEVST----------KCGHIFCKKCIKNALSLQ--AKCPTC 164
Query: 506 QK 511
+K
Sbjct: 165 RK 166
>At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 261
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 338 ETKKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCI 460
E K CP C + F ++ N+P L CGHT+C+ C+
Sbjct: 41 EEKLECPICWE--SFNVVE-----NVPYVLWCGHTICKYCL 74
>At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 398 ISKINLPLFLECGHTV-CENCIRNIVKFHEPIECRIC 505
+S+ +P F+ CGH V C C + + P +C +C
Sbjct: 335 VSRRRVPAFIPCGHVVCCRRCASTVERELNP-KCPVC 370
>At5g01520.2 68418.m00066 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 172
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +2
Query: 317 KMEPIDLETKKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRN 466
KM IDLE ++ C C L +K+ LP C H++C NC RN
Sbjct: 134 KMSEIDLEREEECGIC--------LEIRNKVVLPT---CNHSMCINCYRN 172
>At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 242
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +2
Query: 317 KMEPIDLETKKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRN 466
KM IDLE ++ C C L +K+ LP C H++C NC RN
Sbjct: 134 KMSEIDLEREEECGIC--------LEIRNKVVLPT---CNHSMCINCYRN 172
>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 426
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 404 KINLPLFLECGHTVCENCIRNIVKFHEPIECRICQ 508
K++ P+ L C H CE+C+ F C +C+
Sbjct: 371 KMHTPILLRCKHMFCEDCVSE--WFERERTCPLCR 403
>At5g13530.1 68418.m01562 protein kinase family protein / ankyrin
repeat family protein contains similarity to
ankyrin-related gene UNC-44 gi|790608|gb|AAA85854;
contains Pfam domains PF00023: Ankyrin repeat and
PF00069: Protein kinase domain
Length = 834
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 413 LPLFLECGHTVCENCIRNIVKFHEPIECRICQKCMEI 523
+PL L+CGH C++C+ + C +C +
Sbjct: 23 VPLLLQCGHGFCKDCLSKMFSTSSDTTL-TCPRCRHV 58
>At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 308
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 425 LECGHTVCENCIRNIVKFHEPIECRICQK 511
L CGHT+ + C+ ++ H C +C K
Sbjct: 216 LPCGHTIHQKCLEE-MRDHYQYACPLCSK 243
>At5g18650.1 68418.m02214 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 267
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +2
Query: 353 CPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIECRICQKCMEIDSS 532
CP C Y++ + ++ N+ ++CGHT+ C ++K + C IC + + ID S
Sbjct: 153 CPIC---YEY-LFDSLKDTNV---MKCGHTMHVECYNEMIK-RDKFCCPICSRSV-IDMS 203
Query: 533 ES 538
++
Sbjct: 204 KT 205
>At5g08730.1 68418.m01037 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster]
Length = 500
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 341 TKKCCPNCSQPYQFQILSTISKIN-LPLFLECGHTVCENCIRNIVKFHEPIECR 499
T K CP Y ++ ++ N + + CGHT C C ++ H P+ C+
Sbjct: 165 TIKWCPASGCEYAVELQEDGNEDNVISVVCLCGHTFCWTC---GLESHRPVSCK 215
>At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 713
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +2
Query: 311 VVKMEPIDLETKKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPI 490
V+ ++ ++LE K CP C + +N P+ L C H C++C+ +
Sbjct: 13 VLHLQKLELELK--CPLC-----------LKLLNRPVLLPCDHVFCDSCVHKSSQVES-- 57
Query: 491 ECRICQ 508
C +C+
Sbjct: 58 GCPVCK 63
>At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 714
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +2
Query: 311 VVKMEPIDLETKKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPI 490
V+ ++ ++LE K CP C + +N P+ L C H C++C+ +
Sbjct: 13 VLHLQKLELELK--CPLC-----------LKLLNRPVLLPCDHVFCDSCVHKSSQVES-- 57
Query: 491 ECRICQ 508
C +C+
Sbjct: 58 GCPVCK 63
>At5g57710.1 68418.m07214 heat shock protein-related contains
similarity to 101 kDa heat shock protein; HSP101
[Triticum aestivum] gi|11561808|gb|AAC83689
Length = 990
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 341 TKKCCPNCSQPYQFQILSTISKINLP 418
T KCCP C Q Y+ + L+ I ++ P
Sbjct: 414 TLKCCPQCLQSYERE-LAEIDSVSSP 438
>At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEPIECRICQ 508
P+ CGH C C+ ++ + EC +C+
Sbjct: 149 PVLTCCGHLYCWPCLYQWLQISDAKECPVCK 179
>At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEPIECRICQ 508
P+ CGH C C+ ++ + EC +C+
Sbjct: 149 PVLTCCGHLYCWPCLYQWLQISDAKECPVCK 179
>At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 416 PLFLECGHTVCENCIRNIVKFHEPIECRICQ 508
P+ CGH C C+ ++ + EC +C+
Sbjct: 149 PVLTCCGHLYCWPCLYQWLQISDAKECPVCK 179
>At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 260
Score = 27.5 bits (58), Expect = 7.2
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Frame = +2
Query: 224 QIKHKEIDLLTIRKM-FPLK*-SKVIAKIFKVVKMEPIDLETKKCCPNCSQPYQFQILST 397
Q+ H +D L + F LK SK I K + + LE ++ C C L T
Sbjct: 117 QLLHSNLDELETTDIGFDLKRLSKKITKEARSSRFSNAGLEREEECGIC--------LET 168
Query: 398 ISKINLPLFLECGHTVCENCIRNIVKFHEPIECRICQKCMEIDSSE 535
+K+ LP C H++C C RN + C C+ M+ +SE
Sbjct: 169 CTKMVLP---NCCHSMCIKCYRNWNLKSQ--SCPFCRGSMKRVNSE 209
>At5g38895.1 68418.m04704 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 221
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/69 (24%), Positives = 28/69 (40%)
Frame = +2
Query: 332 DLETKKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIECRICQK 511
D + + CP C Y + N + +C H +CI ++ E C +C K
Sbjct: 162 DSDDEDICPTCLDDYTLE--------NPKIITKCSHHFHLSCIYEWMERSE--TCPVCGK 211
Query: 512 CMEIDSSES 538
M D +E+
Sbjct: 212 VMAFDENET 220
>At3g11340.1 68416.m01379 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 447
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +3
Query: 417 HCSWNVVT--LFVKIVLETLSSFTN-RLNAGYARNVWKL-IHLNH 539
HC WN + I + SF + R+NA Y +VWK+ +HL +
Sbjct: 345 HCGWNSTLEGICEAIPMICRPSFGDQRVNARYINDVWKIGLHLEN 389
>At1g62150.1 68414.m07011 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 463
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 215 EMFVLYFRRTLTVGAHWPIKKKCIAISGFNK 123
E F +Y R LTV W + KKC A G+++
Sbjct: 267 ENFNVYKRFGLTVNDVWELFKKCPAFLGYSE 297
>At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger)
family protein
Length = 421
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +2
Query: 320 MEPIDLETKKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIECR 499
M + ET + C +CS I I + + EC HT C CI + E C
Sbjct: 2 MIKVKKETMRACLSCS------ICDNILR-DATTISECLHTFCRKCIYEKITEDEIETCP 54
Query: 500 IC 505
+C
Sbjct: 55 VC 56
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,377,943
Number of Sequences: 28952
Number of extensions: 242564
Number of successful extensions: 633
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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