Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b10r
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18810.1 68416.m02389 protein kinase family protein contains ...    33   0.16 
At1g21660.1 68414.m02711 expressed protein low similarity to SP|...    31   0.37 
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden...    29   1.5  
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains...    29   1.9  
At3g18660.1 68416.m02370 glycogenin glucosyltransferase (glycoge...    28   3.4  
At4g02425.1 68417.m00328 expressed protein                             27   5.9  
At3g44690.1 68416.m04806 expressed protein                             27   5.9  
At3g44370.1 68416.m04767 expressed protein weak similarity to At...    27   7.9  

>At3g18810.1 68416.m02389 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 700

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 16/69 (23%), Positives = 36/69 (52%)
 Frame = +2

Query: 128 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 307
           +N  G +G+N++   +N    +  D+NNG   D + +  N +G+ +  ++ +     G N
Sbjct: 71  NNNDGNNGNNNNDNNNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNGNDNNGNNNNGNN 130

Query: 308 SRSNDNRSG 334
           + +N+  +G
Sbjct: 131 NDNNNQNNG 139



 Score = 28.7 bits (61), Expect = 2.6
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 128 DNRGGVDGSNDDGL-RDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGG 304
           +N G  +  N++G  +DN    +  + NN  G D +G+N N + +    D  ++  G G 
Sbjct: 87  NNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNGNDNNGNNNNGNNN----DNNNQNNGGGS 142

Query: 305 NSRS 316
           N+RS
Sbjct: 143 NNRS 146


>At1g21660.1 68414.m02711 expressed protein low similarity to
           SP|O14976 Cyclin G-associated kinase (EC 2.7.1.-) {Homo
           sapiens}; supporting cDNA gi|20466222|gb|AY099577.1|
          Length = 523

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +2

Query: 176 NGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDN 325
           NG+LF    D + +    + +NR  S D DV   L+K   +G NS+S+ N
Sbjct: 64  NGSLF----DGDDIFFPANSTNRKVSNDFDVFAGLNKSSSSGDNSKSSLN 109


>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
           identical to nuclear RNA binding protein GI:6492264 from
           [Arabidopsis thaliana]
          Length = 355

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 200 DDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSG 334
           D NNG    +SG     SG+ DV    ++RRG GG  R +    G
Sbjct: 86  DGNNG----YSGGYTKPSGEGDVSKSSYERRGGGGAPRGSFRGEG 126


>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 1025

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 478 LIAVASARVFEPISVGPALVDTYEPIDTEPAYVDIPIP 365
           ++ V +A+ FE +  GPAL+D  + +D      D  IP
Sbjct: 375 ILGVMTAKEFESLMNGPALIDRGKSLDLSSGQGDSSIP 412


>At3g18660.1 68416.m02370 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-1 from
           Homo sapiens [SP|P46976], Oryctolagus cuniculus
           [SP|P13280]
          Length = 655

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 425 CRSNGNWFKDTGRSH 469
           CR  GNW +D GR H
Sbjct: 218 CRKEGNWSRDVGRLH 232


>At4g02425.1 68417.m00328 expressed protein 
          Length = 262

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 191 SLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSG 334
           SL DD+NG G   S SN +  G   +     +RR +   S  + +RSG
Sbjct: 70  SLADDDNG-GKTLSASNYSNRGSFRLVARKRRRRNSRSVSGRSSDRSG 116


>At3g44690.1 68416.m04806 expressed protein 
          Length = 1176

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 194  LFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDN 325
            LFDD + + LD     R   GDV V+  +  + G      SND+
Sbjct: 998  LFDDRDQVYLDDERLQRRNGGDVKVYANMRYQDGRQEVYHSNDS 1041


>At3g44370.1 68416.m04767 expressed protein weak similarity to
           AtOXA1 [Arabidopsis thaliana] GI:6624207
          Length = 338

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +2

Query: 128 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGS 238
           D+  GV GSND GL  + ++ SL   +NG GL+F  S
Sbjct: 60  DSIAGV-GSNDHGLEFDDSIASL--GSNGHGLEFGDS 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,838,129
Number of Sequences: 28952
Number of extensions: 88571
Number of successful extensions: 300
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)