Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b09r
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    27   1.4  
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.5  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   4.4  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   4.4  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   5.8  

>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 113 HELRPKCYCYFLYIVFLTSPNFHP 184
           H +R  C C F +  F+TS  FHP
Sbjct: 336 HPVRKDCLCCFEHSDFVTSIAFHP 359


>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = -3

Query: 447 LGDLP*T*GLSETKIDFCEVRISSVLLWCHRGLTH*LCLRLPVLASTPYALEKLGHHSPV 268
           L DL    GLS  KID  ++ +S+    CH+GL       L VL  +P A+ +L    P 
Sbjct: 188 LADLTQQVGLS--KIDVQDLNVSACAFSCHKGLG--CPTGLGVLYVSPLAISELRSTPPF 243

Query: 267 RSG 259
             G
Sbjct: 244 VGG 246


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 371 FYGVIVGSPIDFVCAY 324
           FY  + G+PIDF C Y
Sbjct: 467 FYSFLPGNPIDFSCNY 482


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 324 PVLASTPYALEKLGHH 277
           P+L+  P  LEK GHH
Sbjct: 68  PILSEKPMFLEKFGHH 83


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +2

Query: 11   LSDNNISQ----ENISIYIDLTVRSL*INLDFVWLNCTHELRPKCYCYFLYIVFL 163
            +SD+ IS     EN  + +  TVR L + +  ++L    ++  K Y  F+Y  F+
Sbjct: 1030 VSDDQISSQEAFENFEVKMAYTVRQLSLKVFLLFLKSCSDVDFKPYNVFIYTAFV 1084


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,832
Number of Sequences: 5004
Number of extensions: 42449
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)