Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b09r
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    23   1.6  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   8.5  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 128 KCYCYFLYIVFLTSPNFHPVVQSPAGCVRNV 220
           +C  +FL ++ +TS    P +     C R+V
Sbjct: 6   RCTFFFLSVILITSYFVTPTMSIKCNCKRHV 36


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 2   LNALSDN--NISQENISIYIDLTVR 70
           +N ++D   NI  EN+ +YI+  ++
Sbjct: 44  INDVNDGKINIEDENVQLYIECAMK 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,325
Number of Sequences: 438
Number of extensions: 3035
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)