Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b09f
(590 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z34801-4|CAA84328.1| 236|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z81449-9|CAB03760.3| 700|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z81449-8|CAI70399.1| 705|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z49068-6|CAA88857.1| 239|Caenorhabditis elegans Hypothetical pr... 27 10.0
X64415-2|CAA45761.1| 700|Caenorhabditis elegans unc-93 protein. 27 10.0
X64415-1|CAA45760.1| 705|Caenorhabditis elegans unc-93 protein. 27 10.0
AC006633-6|AAK68378.4| 578|Caenorhabditis elegans Hypothetical ... 27 10.0
>Z34801-4|CAA84328.1| 236|Caenorhabditis elegans Hypothetical
protein F59A2.3 protein.
Length = 236
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +2
Query: 164 LRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLTHGGLGSTFAAFD 343
LRS VR + ++ + + T A+ RE+ A Q S G + TFA F
Sbjct: 15 LRSSQVVRMAAPRHFSQSAKVLSVTPELQQALN-REIEAEQQLSSDNLQGAVAPTFAGFQ 73
Query: 344 ITN 352
+TN
Sbjct: 74 VTN 76
>Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical
protein F46F6.2 protein.
Length = 1012
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = -2
Query: 388 NFHPVVQSPAGCVRNVKSGKGGTESAVS----KPDRTGL*CPNFSSAYGVDASTGRRKQS 221
+F P +GC+ +G G S V + D G+ P F S YG+DAS G++K+S
Sbjct: 346 SFMPYSLQISGCLEVTINGCAGILSEVFERKIRKDVPGV--PGFISVYGMDAS-GKKKKS 402
>Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical
protein F46F6.2 protein.
Length = 1012
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = -2
Query: 388 NFHPVVQSPAGCVRNVKSGKGGTESAVS----KPDRTGL*CPNFSSAYGVDASTGRRKQS 221
+F P +GC+ +G G S V + D G+ P F S YG+DAS G++K+S
Sbjct: 346 SFMPYSLQISGCLEVTINGCAGILSEVFERKIRKDVPGV--PGFISVYGMDAS-GKKKKS 402
>Z81449-9|CAB03760.3| 700|Caenorhabditis elegans Hypothetical
protein C46F11.1b protein.
Length = 700
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -2
Query: 532 SQENISIYIDLTVRSL*INLDFV-WLNCTHELRPKCYCYFLYIVFLTSPNFHPVVQSPAG 356
S +++Y+ L + SL + + L C + YFLYIV P + ++ +
Sbjct: 275 SDSLVALYLSLAISSLFVPSFMINRLGCKLTFLIAIFVYFLYIVINLRPTYSSMIPASIF 334
Query: 355 C 353
C
Sbjct: 335 C 335
>Z81449-8|CAI70399.1| 705|Caenorhabditis elegans Hypothetical
protein C46F11.1a protein.
Length = 705
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -2
Query: 532 SQENISIYIDLTVRSL*INLDFV-WLNCTHELRPKCYCYFLYIVFLTSPNFHPVVQSPAG 356
S +++Y+ L + SL + + L C + YFLYIV P + ++ +
Sbjct: 280 SDSLVALYLSLAISSLFVPSFMINRLGCKLTFLIAIFVYFLYIVINLRPTYSSMIPASIF 339
Query: 355 C 353
C
Sbjct: 340 C 340
>Z49068-6|CAA88857.1| 239|Caenorhabditis elegans Hypothetical
protein K01C8.6 protein.
Length = 239
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +2
Query: 95 KEDFDSFRRSTLNLGVIGNQDRLLRSENFVRASMVS-----SWAHPLTLFAPTGTRINAI 259
K+ FD S+LN ++GN LL + S++ +W PL + A G ++ +
Sbjct: 125 KKIFDKTPMSSLNTVLVGNNAILLAKDISAIKSILQETDKLNWIEPLVMMA-DGRIVDMV 183
Query: 260 RAREVGASQS 289
ARE+ S
Sbjct: 184 DARELAKLSS 193
>X64415-2|CAA45761.1| 700|Caenorhabditis elegans unc-93 protein.
Length = 700
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -2
Query: 532 SQENISIYIDLTVRSL*INLDFV-WLNCTHELRPKCYCYFLYIVFLTSPNFHPVVQSPAG 356
S +++Y+ L + SL + + L C + YFLYIV P + ++ +
Sbjct: 275 SDSLVALYLSLAISSLFVPSFMINRLGCKLTFLIAIFVYFLYIVINLRPTYSSMIPASIF 334
Query: 355 C 353
C
Sbjct: 335 C 335
>X64415-1|CAA45760.1| 705|Caenorhabditis elegans unc-93 protein.
Length = 705
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -2
Query: 532 SQENISIYIDLTVRSL*INLDFV-WLNCTHELRPKCYCYFLYIVFLTSPNFHPVVQSPAG 356
S +++Y+ L + SL + + L C + YFLYIV P + ++ +
Sbjct: 280 SDSLVALYLSLAISSLFVPSFMINRLGCKLTFLIAIFVYFLYIVINLRPTYSSMIPASIF 339
Query: 355 C 353
C
Sbjct: 340 C 340
>AC006633-6|AAK68378.4| 578|Caenorhabditis elegans Hypothetical
protein F35B3.7 protein.
Length = 578
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 214 PIDFVCAYRYSHQRHT 261
PIDFV + RYSHQ T
Sbjct: 302 PIDFVTSTRYSHQEAT 317
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,826,528
Number of Sequences: 27780
Number of extensions: 262219
Number of successful extensions: 582
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -