Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b08r
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    28   1.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   6.4  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   8.5  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    25   8.5  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    25   8.5  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 534 ICVMTTQQEGPCMSAVGGRARPGETRRVHPSDTLVP 641
           +C  + +   PC   VG   RP E  + +PS   VP
Sbjct: 52  LCNDSHEALSPCTQPVGNSGRPVEAFKTYPSTPAVP 87


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -3

Query: 239 PHVTVALCACGAQCVYRNDCRTDNVTCG 156
           P+     C CG   +    C  +NV CG
Sbjct: 672 PYFVKKRCLCGKHILENQPCYRENVRCG 699


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
 Frame = -2

Query: 600 LVEPALPLHSYRGPPVG*SLRKFYCDYTMLFFPKEVILEQK-----FSANFIRIPARFEN 436
           ++EP   LH+         L+K    + +   PK+ +L+ K       A+F   P  F N
Sbjct: 384 ILEPLYKLHTLTISDEAEKLKKHLSSFQIYLKPKDYLLDPKPLLQLICASFFGFPVGFVN 443

Query: 435 RHSRIARTSYEDRSRLVTS*FYLG 364
             +R   +  E+ +R  +   Y+G
Sbjct: 444 AVTRHIPSPRENAARKASQ-SYIG 466


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 175 VLQSFLYTHCAPHAHSATVTCGTFRL 252
           V++  LYTH  P A    + C  FR+
Sbjct: 118 VVKHPLYTHVPPSAEEGGINCEIFRI 143


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 629 VGGVDSARLSWSSPPSHCTH 570
           +GG+D A   W    +HC+H
Sbjct: 194 IGGIDGAIKIWDLRNNHCSH 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,967
Number of Sequences: 5004
Number of extensions: 64246
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)