Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b08r
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39600| Best HMM Match : Sushi (HMM E-Value=0)                       31   0.74 
SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)                 30   1.7  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      30   1.7  
SB_22686| Best HMM Match : zf-C3HC4 (HMM E-Value=0.1)                  29   3.0  
SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5)                  29   3.9  
SB_20378| Best HMM Match : Adeno_E1B_19K (HMM E-Value=5.7)             29   3.9  
SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)                 29   5.2  
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)               28   9.1  

>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1368

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 218 CACGAQCVYRNDCRTDNVTCGIPEA 144
           C C  QC Y   C  + +TCGIPEA
Sbjct: 296 CLCDGQCGY--SCVENGLTCGIPEA 318


>SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)
          Length = 1052

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 278 AIGCALRHNNLKVPHVTVAL-CACGAQCVYRNDCRTD 171
           A  C  R NN ++      L C+C  QCVY  DC  D
Sbjct: 204 ATSCKNRCNNTRMFSTEAQLMCSCDLQCVYFYDCCAD 240


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 311 VCADTRPLPVLAIGCALRHNNLKVPHVTVALCAC 210
           VC   R   V+   C + H  L+VPH  VA C+C
Sbjct: 385 VCCSCR---VVCCSCRVAHAVLRVPHGAVACCSC 415


>SB_22686| Best HMM Match : zf-C3HC4 (HMM E-Value=0.1)
          Length = 265

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
 Frame = -3

Query: 236 HVTVALCACGAQCVY--RNDCR------TDNVTCGIPEASIR*AH------RLCYRFGSA 99
           ++ VA+C C  +C+Y  +  CR        N++  I + S+R  +      ++C   G  
Sbjct: 21  NLPVAICQCSLRCLYAFKGVCRICQSTGRQNLSVAICQCSVRWLYAFKGVCQICQSTGRQ 80

Query: 98  SLSVCLSICVSRWL 57
           +L V +  C  RWL
Sbjct: 81  NLLVAICQCSVRWL 94


>SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5)
          Length = 184

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
 Frame = -3

Query: 236 HVTVALCACGAQ--------CVYRNDCRTDNVTCGIPEASIR*AH------RLCYRFGSA 99
           +++VA+C C  +        C  R      N++  I ++S+R  +      R+C   G  
Sbjct: 50  NLSVAICQCSVRWLFAVKRVCRIRQSTGRQNLSVAICQSSVRWLYAFKRVCRICQSTGRQ 109

Query: 98  SLSVCLSICVSRWL 57
           +LSV +  C  RWL
Sbjct: 110 NLSVTICECSVRWL 123


>SB_20378| Best HMM Match : Adeno_E1B_19K (HMM E-Value=5.7)
          Length = 132

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 418 SHELRGPQPPRHIVILFREWRVNRTKQNVDS 326
           S E R  +P + +  L  EWR+ RTK+N+ S
Sbjct: 83  SEEARTDRPSQQLRSLNGEWRLMRTKRNIHS 113


>SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)
          Length = 1068

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 62  SDSHR*TDRQTDWRSQTCNRACVPTEYSPQGYH-TSHYL 175
           SDS+   ++ T   SQ CN+   P E+ P  +  TSH+L
Sbjct: 786 SDSNCAENKPTVTLSQECNKVNCPAEWVPSAWSATSHFL 824


>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
          Length = 1153

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 721 SVAAPTSGCCSITRSRGPRSQG--GNVHSGTSVS 626
           SVAAPTS   S   S  PR QG  G + + T +S
Sbjct: 875 SVAAPTSAQYSAVTSSSPRGQGVAGAIQTSTPLS 908


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,030,344
Number of Sequences: 59808
Number of extensions: 593476
Number of successful extensions: 1703
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1702
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)