Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b08r
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.9  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.1  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 108 KPVTEPVCLPNTRLRDTTRHIICSTI 185
           +P T+   + + RLR+T  ++ C+T+
Sbjct: 666 RPKTKLTGINDARLRNTMENLTCATV 691


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 239 PHVTVALCACGAQCVYRN 186
           P+ T+A+C C  +C  R+
Sbjct: 97  PNSTIAVCVCMRKCPRRH 114


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 551 PTGGPLYECSGR 586
           P G P+YEC+ R
Sbjct: 466 PPGTPIYECNKR 477


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 621 PSDTLVPECTLPPCERGPLLRVMLQH 698
           P D +  E + P CE+ P L ++  H
Sbjct: 74  PKDLVYLEPSPPFCEKNPKLGILGTH 99


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 621 PSDTLVPECTLPPCERGPLLRVMLQH 698
           P D +  E + P CE+ P L ++  H
Sbjct: 75  PKDLVYLEPSPPFCEKNPKLGILGTH 100


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 477 FSANFIRIPARFENRHSRIARTSYEDRSRL 388
           ++ ++ ++P   +N H R A  +Y D S +
Sbjct: 138 YNFDYPQVPYTVKNFHPRCAVNNYNDPSNV 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,085
Number of Sequences: 438
Number of extensions: 5277
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)