Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b08r
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    28   7.4  
At5g66640.1 68418.m08399 LIM domain-containing protein-related c...    27   9.8  
At4g09680.1 68417.m01590 expressed protein                             27   9.8  

>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 578 CTHTGALLLGSHYANFIAITQCYSFRKKSFLNKNS 474
           CTH+G  L  S YA+   +  C     + FL K S
Sbjct: 133 CTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGS 167


>At5g66640.1 68418.m08399 LIM domain-containing protein-related
           contains low similarity to Pfam profile PF00412: LIM
           domain
          Length = 450

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 294 PPPCTSDRMRIAS*QSKSPTCHCCTVCMR 208
           PPP    +  I    S +P C CC  C R
Sbjct: 76  PPPSIDGKSEIGDGTSVNPRCLCCFHCHR 104


>At4g09680.1 68417.m01590 expressed protein
          Length = 1075

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 164 TCGIPEASIR*AHRLCYRFGSASLSVCLSI 75
           T  +P  +++  +R C+RF    L++C  I
Sbjct: 70  TVALPSETLKCPNRYCFRFTDGDLTICCDI 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,943,844
Number of Sequences: 28952
Number of extensions: 364915
Number of successful extensions: 944
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)