Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b08f
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    29   0.73 
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.7  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   2.9  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    26   5.1  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   6.8  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   6.8  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 148 REDRLQLSRGPATRPPRHSEVRLQDSLMTTLARQSAPYPRRLVGLRYTHFIWG 306
           R DR Q   G  T+P  H + ++   ++  L   S  Y  +LV  R  HF  G
Sbjct: 42  RYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELG 94


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = -1

Query: 615 CCSTRTSVLPRSPAAFSVLGHQTGRATSATNEMFFNSALCCTHNYFMAFIQKERVLYTDI 436
           C +T +S L R  A++ V G  +   +S+ +  F N  L  T+NYFM  ++   V+    
Sbjct: 281 CNATTSSSLFRQIASYGVYG--SFHFSSSESGSFAN--LIGTNNYFMTDVKSSSVVIVQS 336

Query: 435 *IRCSV 418
              CS+
Sbjct: 337 ETSCSI 342


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +1

Query: 103 GLEQMIRSTCSTFGLREDRLQLSRGPATRPPRHSEVRLQDSLMTTLARQSAPYPRRLVGL 282
           G  + +R  CST+ LR+D   LS     R   +      +    T+ R+  P  RRLV  
Sbjct: 736 GDHKQLRPGCSTYALRQDPFNLSISMFERLVEND----MEYTRLTMQRRMHPQIRRLVSS 791

Query: 283 RY 288
            Y
Sbjct: 792 VY 793


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 488 IIILWLLFRKREFYTRIFKSD 426
           ++I+ LL + +EFY+R F SD
Sbjct: 182 LLIITLLHKGQEFYSRSFSSD 202


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 594  VLPRSPAAFSVLGHQTGRATSATNEMFFNSALCCTHNYFMA 472
            V+P   A     GH   RA S    M  NS L   +NY+++
Sbjct: 1149 VIPFIIAGSDADGHPADRAYSPQEIMNTNSTLVIDYNYYLS 1189


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 379 ENNMRQYSFPIHLSACLMWMVLI 311
           E+N+ ++ F +H   CL+W  L+
Sbjct: 185 EDNLPEWYFEVHSDFCLVWNDLV 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,481
Number of Sequences: 5004
Number of extensions: 48407
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)