Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b08f
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0110 + 25632514-25632834,25633200-25634039                       29   3.0  
02_02_0248 - 8267332-8268276,8268338-8269288                           29   3.0  
04_03_0197 - 12547382-12547450,12547955-12548231,12549031-12549137     27   9.2  

>05_06_0110 + 25632514-25632834,25633200-25634039
          Length = 386

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 626 AASNAAAPGRRCCHAHQPRSACWVT 552
           AA+ AAA GRRC H    ++  W T
Sbjct: 244 AAAQAAAEGRRCLHCETDKTPQWRT 268


>02_02_0248 - 8267332-8268276,8268338-8269288
          Length = 631

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = +1

Query: 205 EVRLQDSLMTTLARQSAPYPRRLVGLR 285
           E  LQD LM       APYPRRL  LR
Sbjct: 229 EPELQDVLMELFVDFPAPYPRRLAYLR 255


>04_03_0197 - 12547382-12547450,12547955-12548231,12549031-12549137
          Length = 150

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 198 TRRSCRWTSAELKSVFAKTECAAGTPYHL 112
           TRR C+WT+  L+ + A TE +    Y L
Sbjct: 76  TRRWCQWTAYGLRLMMASTEISEVAAYAL 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,659,848
Number of Sequences: 37544
Number of extensions: 358203
Number of successful extensions: 875
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)