Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b08f
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54230| Best HMM Match : EGF (HMM E-Value=0)                         31   0.58 
SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24)            27   9.4  
SB_5308| Best HMM Match : 7tm_1 (HMM E-Value=0)                        27   9.4  

>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1359

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 526 RCRCCPPSLVTQHAERG 576
           RC CCPP    QH E+G
Sbjct: 900 RCSCCPPCFTGQHCEKG 916


>SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24)
          Length = 1058

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 274 PVVLDTELTVAPASSSKSLAGVLPNDAEVLSLDLC*AEVCLREDRMCCR 128
           PV+L   L +     +KS+AG +  +  V+ +     +  L E  +CCR
Sbjct: 250 PVILSKYLPIKGEGYNKSIAGTISRNHMVMDVIFVLVDSDLVEQVVCCR 298


>SB_5308| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 608

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 442 GYLNQMFSGHHEVG 401
           GYLNQM+ GH E G
Sbjct: 370 GYLNQMYKGHSEEG 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,794,619
Number of Sequences: 59808
Number of extensions: 404468
Number of successful extensions: 801
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)