Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b06r
         (725 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1HG51 Cluster: Putative uncharacterized protein; n=2; ...    34   4.1  
UniRef50_Q2H8B1 Cluster: Putative uncharacterized protein; n=2; ...    34   4.1  
UniRef50_Q8A8H3 Cluster: Outer membrane protein, OmpA family; n=...    33   9.5  
UniRef50_A7SMC9 Cluster: Predicted protein; n=3; Nematostella ve...    33   9.5  
UniRef50_Q88W23 Cluster: tRNA uridine 5-carboxymethylaminomethyl...    33   9.5  

>UniRef50_A1HG51 Cluster: Putative uncharacterized protein; n=2;
           Ralstonia pickettii|Rep: Putative uncharacterized
           protein - Ralstonia pickettii 12J
          Length = 85

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +1

Query: 229 TRSERARRRLGLATCGHRIHIFLGFSNDFFSHVLYKYI*CMHRKVR 366
           TR E    RL  A CG RIH F  FS     H    Y+ C+  ++R
Sbjct: 32  TRLEFWESRLAFAFCGKRIHSFFPFSKQVSFHGHALYVHCLEFQMR 77


>UniRef50_Q2H8B1 Cluster: Putative uncharacterized protein; n=2;
           Sordariomycetes|Rep: Putative uncharacterized protein -
           Chaetomium globosum (Soil fungus)
          Length = 419

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 214 YINECTRSERARRRLGLATCGHRIHIFLGF 303
           ++  CTR  + R+ +G A C   IH+FL F
Sbjct: 327 FVERCTRDAKLRKHIGRAPCQPDIHLFLAF 356


>UniRef50_Q8A8H3 Cluster: Outer membrane protein, OmpA family; n=7;
           Bacteria|Rep: Outer membrane protein, OmpA family -
           Bacteroides thetaiotaomicron
          Length = 266

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -2

Query: 139 ICVNDLIKYYYISIVGKNLILSKWKVNPLCYYLTTFDSFC 20
           +CV +L+KYY+I++  K+ I++K K   L   +T   S C
Sbjct: 9   LCVVNLLKYYFINLFKKHCIMNKMKWMVLFMSITMIFSGC 48


>UniRef50_A7SMC9 Cluster: Predicted protein; n=3; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 194

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -3

Query: 462 CASQCDGISVGLVSAPNLYLCICVRACLCA 373
           CA+QC+ + V L +  N+YLC  +R C+CA
Sbjct: 90  CATQCECVFVPLNA--NVYLCHSMRMCICA 117


>UniRef50_Q88W23 Cluster: tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme gid; n=27; Bacteria|Rep: tRNA
           uridine 5-carboxymethylaminomethyl modification enzyme
           gid - Lactobacillus plantarum
          Length = 441

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = +3

Query: 447 HIATHTGRLPFVPLQLNFSYIVKLTEYFKSK*KEXXXXXXXXXXXXXXNFLTETMTVFN 623
           H  THT    F P+  NF  + KL +  + K +E               F  ET+TV N
Sbjct: 384 HYITHTSASNFQPMNANFGIMPKLKQRIRDK-RERNTAISERALADLTTFKDETLTVNN 441


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,902,953
Number of Sequences: 1657284
Number of extensions: 10726682
Number of successful extensions: 30699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30401
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)