BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV10b06r (725 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_01_0158 + 2332381-2333211 30 1.6 11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475 28 8.7 05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928 28 8.7 04_01_0204 + 2467657-2467781,2467955-2468044,2469071-2469169,246... 28 8.7 02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728 28 8.7 >09_01_0158 + 2332381-2333211 Length = 276 Score = 30.3 bits (65), Expect = 1.6 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = -3 Query: 288 VYSVSASSQPEATPRSLAPCTFINVINV*KN-LTNSV 181 V ++SA+ A PR LA C ++NVI++ N LT S+ Sbjct: 127 VLNLSANRLSGAIPRDLARCAYLNVIDLHANQLTGSI 163 >11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475 Length = 634 Score = 27.9 bits (59), Expect = 8.7 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%) Frame = -3 Query: 249 PRSLAPCTFINVINV*KN-LTNSV 181 P SLA CT++N++N+ N LT ++ Sbjct: 166 PESLANCTYLNIVNLQNNKLTGAI 189 >05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928 Length = 244 Score = 27.9 bits (59), Expect = 8.7 Identities = 14/49 (28%), Positives = 23/49 (46%) Frame = +2 Query: 299 DFPMIFFLTYFINIYSVCIGRCGRRAQRHARTHIHKYKLGADTSPTLIP 445 D+ I L + + +CI CG A R+AR + +Y G + + P Sbjct: 178 DWHKISVLNVMVLVVLICICACGCCAFRNARRSVSEYPYGVNRMHKIHP 226 >04_01_0204 + 2467657-2467781,2467955-2468044,2469071-2469169, 2469353-2469371,2469965-2470021,2470585-2471265, 2471639-2471742,2471919-2472057,2472173-2472334, 2472565-2472681 Length = 530 Score = 27.9 bits (59), Expect = 8.7 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 169 IYSFNRVS*IFLNIYYINECTRSERARRRLGLATCG 276 I ++ + FL + +I R+ ARR+LG +CG Sbjct: 125 IVKWSEIMEFFLTMEFIIRSIRNSTARRKLGYLSCG 160 >02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728 Length = 463 Score = 27.9 bits (59), Expect = 8.7 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = -1 Query: 434 SGSCR-LLTYICVYVCVRASVRGARTFRC 351 SG CR L Y+ + + A VRGA TFRC Sbjct: 365 SGYCRSALDYLELQPDLSALVRGAHTFRC 393 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,192,065 Number of Sequences: 37544 Number of extensions: 268660 Number of successful extensions: 642 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 635 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 642 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1898162308 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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