Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b06r
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0158 + 2332381-2333211                                           30   1.6  
11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475           28   8.7  
05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928           28   8.7  
04_01_0204 + 2467657-2467781,2467955-2468044,2469071-2469169,246...    28   8.7  
02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728     28   8.7  

>09_01_0158 + 2332381-2333211
          Length = 276

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -3

Query: 288 VYSVSASSQPEATPRSLAPCTFINVINV*KN-LTNSV 181
           V ++SA+    A PR LA C ++NVI++  N LT S+
Sbjct: 127 VLNLSANRLSGAIPRDLARCAYLNVIDLHANQLTGSI 163


>11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475
          Length = 634

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -3

Query: 249 PRSLAPCTFINVINV*KN-LTNSV 181
           P SLA CT++N++N+  N LT ++
Sbjct: 166 PESLANCTYLNIVNLQNNKLTGAI 189


>05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928
          Length = 244

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 299 DFPMIFFLTYFINIYSVCIGRCGRRAQRHARTHIHKYKLGADTSPTLIP 445
           D+  I  L   + +  +CI  CG  A R+AR  + +Y  G +    + P
Sbjct: 178 DWHKISVLNVMVLVVLICICACGCCAFRNARRSVSEYPYGVNRMHKIHP 226


>04_01_0204 +
           2467657-2467781,2467955-2468044,2469071-2469169,
           2469353-2469371,2469965-2470021,2470585-2471265,
           2471639-2471742,2471919-2472057,2472173-2472334,
           2472565-2472681
          Length = 530

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 169 IYSFNRVS*IFLNIYYINECTRSERARRRLGLATCG 276
           I  ++ +   FL + +I    R+  ARR+LG  +CG
Sbjct: 125 IVKWSEIMEFFLTMEFIIRSIRNSTARRKLGYLSCG 160


>02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728
          Length = 463

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 434 SGSCR-LLTYICVYVCVRASVRGARTFRC 351
           SG CR  L Y+ +   + A VRGA TFRC
Sbjct: 365 SGYCRSALDYLELQPDLSALVRGAHTFRC 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,192,065
Number of Sequences: 37544
Number of extensions: 268660
Number of successful extensions: 642
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)