Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b06r
(725 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19034| Best HMM Match : Metallothio (HMM E-Value=9) 33 0.31
SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31) 30 1.7
SB_10493| Best HMM Match : Keratin_B2 (HMM E-Value=3.4) 30 1.7
SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23) 28 6.7
SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 28 8.9
SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 28 8.9
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_19034| Best HMM Match : Metallothio (HMM E-Value=9)
Length = 228
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -3
Query: 462 CASQCDGISVGLVSAPNLYLCICVRACLCA 373
CA+QC+ + V L + N+YLC +R C+CA
Sbjct: 6 CATQCECVFVPLNA--NVYLCHSMRMCICA 33
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -3
Query: 462 CASQCDGISVGLVSAPNLYLCICVRACLCA 373
CA+QC+ + V L + N+YLC +R C+CA
Sbjct: 32 CATQCECVFVPLNA--NVYLCHSMRMCICA 59
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -3
Query: 462 CASQCDGISVGLVSAPNLYLCICVRACLCA 373
CA+QC+ + V L + N+YLC +R C+CA
Sbjct: 58 CATQCECVFVPLNA--NVYLCHSMRMCICA 85
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -3
Query: 462 CASQCDGISVGLVSAPNLYLCICVRACLCA 373
CA+QC+ + V L + N+YLC +R C+CA
Sbjct: 84 CATQCECVFVPLNA--NVYLCHSMRMCICA 111
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -3
Query: 462 CASQCDGISVGLVSAPNLYLCICVRACLCA 373
CA+QC+ + V L + N+YLC +R C+CA
Sbjct: 110 CATQCECVFVPLNA--NVYLCHSMRMCICA 137
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -3
Query: 462 CASQCDGISVGLVSAPNLYLCICVRACLCA 373
CA+QC+ + V L + N+YLC +R C+CA
Sbjct: 136 CATQCECVFVPLNA--NVYLCHSMRMCICA 163
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -3
Query: 462 CASQCDGISVGLVSAPNLYLCICVRACLCA 373
CA+QC+ + V L + N+YLC +R C+CA
Sbjct: 162 CATQCECVFVPLNA--NVYLCHSMRMCICA 189
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 462 CASQCDGISVGLVSAPNLYLCICVRACLCA 373
CA+QC+ + V L + +YLC +R C+CA
Sbjct: 188 CATQCECVFVPLNAY--VYLCHSMRMCICA 215
>SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = +2
Query: 314 FFLTYFINIYSVCIGRCGRRAQRHARTHIHKYKLGADTSPTLIPSHCDAHRTSSLCTATV 493
+ L Y N++S C + R+A H H T T +H T +LCT T
Sbjct: 16 YALKYTHNMHSNTRTPCPQTHARYALKHTHTVHSNTHTLCTKTHAHYALKHTHTLCTQTH 75
Query: 494 KLLLHS 511
+HS
Sbjct: 76 THAMHS 81
>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
Length = 974
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -3
Query: 495 LTVAVQREDVRCASQCDGISVGL-VSAPNLYLCI-CVRACLCARR 367
L+V+V V + C +SV + V+ NLYL + C+RAC+C R
Sbjct: 133 LSVSVFLSRVNLSRVCVLVSVSVSVTCVNLYLPVTCLRACVCLSR 177
>SB_10493| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)
Length = 119
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -3
Query: 495 LTVAVQREDVRCASQCDGISVGL-VSAPNLYLCI-CVRACLCARR 367
L+V+V V + C +SV + V+ NLYL + C+RAC+C R
Sbjct: 63 LSVSVFLSRVNLSRVCVLVSVSVSVTCVNLYLPVTCLRACVCLSR 107
>SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23)
Length = 827
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 429 ARHLYHHIATHTGRLPFVPLQLN--FSYIVKLTEYFKS 536
A L +HI THTG PF L+ N F+ +L+ + KS
Sbjct: 157 ATTLNNHIRTHTGEKPFKCLKCNKQFTQSTQLSRHQKS 194
>SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 431
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 423 TRARHLYHHIATHTGRLPF 479
+R+ HL HI THTG PF
Sbjct: 343 SRSDHLTTHIRTHTGEKPF 361
>SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 669
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 423 TRARHLYHHIATHTGRLPF 479
+R+ HL HI THTG PF
Sbjct: 581 SRSDHLTTHIRTHTGEKPF 599
>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1704
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 423 TRARHLYHHIATHTGRLPFV 482
TR+ HL H+ HTG P+V
Sbjct: 1164 TRSSHLKTHVLVHTGEKPYV 1183
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,020,820
Number of Sequences: 59808
Number of extensions: 358561
Number of successful extensions: 979
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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