Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b06r
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.42 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              25   0.55 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   1.3  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    24   1.3  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    24   1.3  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    24   1.3  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    24   1.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.1  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   6.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 462 CASQCDGISVGLVSAPNLYLCICVRACLCARRPHLPM 352
           CAS+  GI      +PN  + +CV    C RR H P+
Sbjct: 82  CASKYCGIGKECELSPNSTIAVCVCMRKCPRR-HRPV 117


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 325 REKKNHWKIPKKCVFC 278
           R KKN   +P +CVFC
Sbjct: 28  RRKKNKKPLPTECVFC 43


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 423 TRARHLYHHIATHTGRLPF 479
           TR  HL  H+  HTG  P+
Sbjct: 20  TRDHHLKTHMRLHTGEKPY 38


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +1

Query: 109 NNILLSHLHKYNYNAVSIN--LIYSFNRVS*IFL--NIYYIN 222
           NN + ++ +KYNYN  + N  L Y+ N +  I +   +YY N
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGN 128


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +1

Query: 109 NNILLSHLHKYNYNAVSIN--LIYSFNRVS*IFL--NIYYIN 222
           NN + ++ +KYNYN  + N  L Y+ N +  I +   +YY N
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGN 128


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +1

Query: 109 NNILLSHLHKYNYNAVSIN--LIYSFNRVS*IFL--NIYYIN 222
           NN + ++ +KYNYN  + N  L Y+ N +  I +   +YY N
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGN 128


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +1

Query: 109 NNILLSHLHKYNYNAVSIN--LIYSFNRVS*IFL--NIYYIN 222
           NN + ++ +KYNYN  + N  L Y+ N +  I +   +YY N
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGN 128


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +2

Query: 278 TEYTFFWDFPMIFFLTYFINIYSVCIGRCGRRAQRHARTHIHKYKLGADTS 430
           T +TF +  PMI  + Y+  I S  +       ++  + ++   +  A+TS
Sbjct: 214 TIFTFSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMNVDSLRSNANTS 264


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 435 HLYHHIATHTGRLPFVPLQLNFSYIVK--LTEYFKS 536
           HL +H+  H G  PF   + ++S + K  L  + KS
Sbjct: 3   HLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKS 38


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 427 EPDTYTITLRRTPDVFPLYRYS 492
           EP+    T   TP  FP Y YS
Sbjct: 320 EPNDEVATYDNTPRDFPYYMYS 341



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 447 HIATHTGRLPFV 482
           H+ THTG  P+V
Sbjct: 194 HMRTHTGEKPYV 205


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 723 SVCVKAENLNXHFVS*HTILASYW 652
           S+CV    LN HF S  T + + W
Sbjct: 317 SICVTVVVLNVHFRSPQTHVMAPW 340


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 133 HKYNYNAVSINLIYSFNRVS*IFL--NIYYIN 222
           +KYNYN     L Y+ N +  I +   +YY N
Sbjct: 96  YKYNYNNNCKKLYYNINYIEQIPIPVPVYYGN 127


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 109 NNILLSHLHKYNYNAVSIN 165
           NN + ++ +KYNYN  + N
Sbjct: 86  NNTIHNNNYKYNYNNNNYN 104


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 109 NNILLSHLHKYNYNAVSIN 165
           NN + ++ +KYNYN  + N
Sbjct: 86  NNTIHNNNYKYNYNNNNYN 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,782
Number of Sequences: 438
Number of extensions: 3600
Number of successful extensions: 24
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)