Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b06r
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to ...    28   5.5  
At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical...    28   5.5  
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff...    27   9.6  

>At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 236

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 125 LNKILLYFYCW*KLNSIEMESKSALLLSY 39
           L  + L  YC+   NSIE E+K  L++SY
Sbjct: 207 LGIVQLALYCYYHRNSIEEETKEPLIVSY 235


>At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical to
           dynamin-like protein 6 (ADL6) [Arabidopsis thaliana]
           GI:6651399; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain, PF00169: PH domain
          Length = 914

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 309 IGKSQKNVYSVSASSQPEATPRSLAPCTFINVI 211
           +  S K   S+ A   P+ T  S  P TF+NV+
Sbjct: 10  LSDSMKQAASLLADEDPDETSSSKRPATFLNVV 42


>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 1065

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 655 LDLHFSSVCDKLNTVIVS 602
           LDLHFSS+C  L T ++S
Sbjct: 442 LDLHFSSLCTHLPTALLS 459


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,898,948
Number of Sequences: 28952
Number of extensions: 235093
Number of successful extensions: 584
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)