Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b04r
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18817| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   7e-10
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   31   0.92 
SB_44229| Best HMM Match : DUF947 (HMM E-Value=0.67)                   30   2.1  
SB_32331| Best HMM Match : DivIVA (HMM E-Value=0.86)                   30   2.1  
SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)                     30   2.1  
SB_33833| Best HMM Match : DUF947 (HMM E-Value=0.2)                    30   2.1  
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)                29   3.7  
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_18817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 32/72 (44%), Positives = 42/72 (58%)
 Frame = -1

Query: 617 STTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHKLMM 438
           ST YAR+M  L  RIFG++  P   +S KVV  FS RPL     I  YYP   + + L++
Sbjct: 2   STNYARKMALLQARIFGKLTRPVTKQSYKVVTHFSRRPL--GGAINSYYPPLKQFNSLLL 59

Query: 437 NLRDYGLFRDEH 402
            LR  G +RD+H
Sbjct: 60  RLRHLGFYRDDH 71


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 494 NEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVKVW 342
           N    HY    + T ++   L++ G    EH+D KE++KRL   R  + VW
Sbjct: 485 NHSDSHY--ASLSTAEVKQRLKNIGELIPEHEDAKEKLKRLESTR-HIMVW 532


>SB_44229| Best HMM Match : DUF947 (HMM E-Value=0.67)
          Length = 465

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 494 NEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVKVW 342
           N    HY    + T ++   L++ G    +H+D KE++KRL   R  + VW
Sbjct: 348 NHSDSHY--ASLSTAEVKQRLKNIGELVPDHEDAKEKLKRLESTR-HIMVW 395


>SB_32331| Best HMM Match : DivIVA (HMM E-Value=0.86)
          Length = 888

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 494 NEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVKVW 342
           N    HY    + T ++   L++ G    +H+D KE++KRL   R  + VW
Sbjct: 119 NHSDSHY--ASLSTAEVKQRLKNIGELVPDHEDAKEKLKRLESTR-HIMVW 166


>SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)
          Length = 685

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 494 NEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVKVW 342
           N    HY    + T ++   L++ G    +H+D KE++KRL   R  + VW
Sbjct: 119 NHSDSHY--ASLSTAEVKQRLKNIGELVPDHEDAKEKLKRLESTR-HIMVW 166


>SB_33833| Best HMM Match : DUF947 (HMM E-Value=0.2)
          Length = 1106

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 494 NEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVKVW 342
           N    HY    + T ++   L++ G    +H+D KE++KRL   R  + VW
Sbjct: 439 NHSDSHY--ASLSTAEVKQRLKNIGELVPDHEDAKEKLKRLESTR-HIMVW 486


>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
          Length = 2293

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 24/90 (26%), Positives = 40/90 (44%)
 Frame = -1

Query: 617  STTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHKLMM 438
            S    ++ K +S R+F   ++  NS   K  +   ARP         +YPR   T+K + 
Sbjct: 1814 SRVVTKKGKAMSERLFEAASMVQNSVYGKSTQGIHARPTEP------WYPRVQPTYKGVK 1867

Query: 437  NLRDYGLFRDEHQDFKEEMKRLRELRGKVK 348
              +  GLF D  +D  E+ K + +   + K
Sbjct: 1868 PRK--GLFGDVDEDTVEKCKSIGKAEFRTK 1895


>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1306

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -1

Query: 578  RIFGEVALPTNS-KSMKVVKIFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEH 402
            R+  E AL  N  K +++  +   R L+  +++ H         KL  +L+D G+  +E 
Sbjct: 978  RLLTEHALAWNKRKILRMADVICKRYLNVVKQLSH------ANKKLSAHLKDIGVSENEI 1031

Query: 401  QDFKEEMKRLREL 363
              + EE+++LRE+
Sbjct: 1032 IGWNEEVQKLREM 1044


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,570,421
Number of Sequences: 59808
Number of extensions: 369508
Number of successful extensions: 697
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)