Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b04r
         (707 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC015462-1|AAH15462.1|  106|Homo sapiens mitochondrial ribosomal...   109   1e-23
AF151897-1|AAD34134.1|  106|Homo sapiens CGI-139 protein protein.     109   1e-23
AC006006-2|AAD43190.1|  106|Homo sapiens unknown protein.             109   1e-23
BC105793-1|AAI05794.1|  112|Homo sapiens MRPS33 protein protein.      107   3e-23
AB065808-1|BAC06027.1|  311|Homo sapiens seven transmembrane hel...    30   9.3  

>BC015462-1|AAH15462.1|  106|Homo sapiens mitochondrial ribosomal
           protein S33 protein.
          Length = 106

 Score =  109 bits (262), Expect = 1e-23
 Identities = 53/93 (56%), Positives = 66/93 (70%)
 Frame = -1

Query: 626 INTSTTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHK 447
           +++ + YA RM RLS R+FGEV  PTNSKSMKVVK+FS  PL   +E   +YP H    +
Sbjct: 1   MSSLSEYAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAE 60

Query: 446 LMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVK 348
           LM  LR  GL+RDEHQDF +E KRL++LRGK K
Sbjct: 61  LMQTLRFLGLYRDEHQDFMDEQKRLKKLRGKEK 93


>AF151897-1|AAD34134.1|  106|Homo sapiens CGI-139 protein protein.
          Length = 106

 Score =  109 bits (262), Expect = 1e-23
 Identities = 53/93 (56%), Positives = 66/93 (70%)
 Frame = -1

Query: 626 INTSTTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHK 447
           +++ + YA RM RLS R+FGEV  PTNSKSMKVVK+FS  PL   +E   +YP H    +
Sbjct: 1   MSSLSEYAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAE 60

Query: 446 LMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVK 348
           LM  LR  GL+RDEHQDF +E KRL++LRGK K
Sbjct: 61  LMQTLRFLGLYRDEHQDFMDEQKRLKKLRGKEK 93


>AC006006-2|AAD43190.1|  106|Homo sapiens unknown protein.
          Length = 106

 Score =  109 bits (262), Expect = 1e-23
 Identities = 53/93 (56%), Positives = 66/93 (70%)
 Frame = -1

Query: 626 INTSTTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHK 447
           +++ + YA RM RLS R+FGEV  PTNSKSMKVVK+FS  PL   +E   +YP H    +
Sbjct: 1   MSSLSEYAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAE 60

Query: 446 LMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVK 348
           LM  LR  GL+RDEHQDF +E KRL++LRGK K
Sbjct: 61  LMQTLRFLGLYRDEHQDFMDEQKRLKKLRGKEK 93


>BC105793-1|AAI05794.1|  112|Homo sapiens MRPS33 protein protein.
          Length = 112

 Score =  107 bits (258), Expect = 3e-23
 Identities = 52/93 (55%), Positives = 66/93 (70%)
 Frame = -1

Query: 626 INTSTTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHK 447
           +++ + YA RM RLS R+FGEV  PTNSKSMKVVK+FS  PL   +E   +YP H    +
Sbjct: 1   MSSLSEYAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAE 60

Query: 446 LMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVK 348
           LM  LR  GL+RDEHQDF +E KRL++LRG+ K
Sbjct: 61  LMQTLRFLGLYRDEHQDFMDEQKRLKKLRGEEK 93


>AB065808-1|BAC06027.1|  311|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 311

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -1

Query: 251 SNSLITTHYLHLMLIKYVIIVTLP 180
           +N L+TT +  L+L+ Y++I++LP
Sbjct: 202 NNGLLTTLWFFLLLVSYIVILSLP 225


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,202,708
Number of Sequences: 237096
Number of extensions: 1800249
Number of successful extensions: 3006
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3000
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)