Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b04r
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54271-7|CAA91037.1|  126|Caenorhabditis elegans Hypothetical pr...    87   2e-17
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    29   3.3  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    29   3.3  
AC006642-8|AAF39827.2|  365|Caenorhabditis elegans Laterally sym...    29   3.3  
AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical ...    27   9.9  
AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z54271-7|CAA91037.1|  126|Caenorhabditis elegans Hypothetical
           protein F21D5.8 protein.
          Length = 126

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
 Frame = -1

Query: 626 INTSTTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEII-HYYPRHMETH 450
           I+  T + +RM RLSNR++GEV +PT++KS+KVV++ SA P  T E++   YYP     H
Sbjct: 17  ISQPTPFGKRMDRLSNRVWGEVVMPTDTKSLKVVRVMSAEPYETKEQLSPKYYPNLPMFH 76

Query: 449 KLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKV 351
            L   LR +GLF D+H  F++    L+ +RGKV
Sbjct: 77  YLTKMLRFHGLFFDDHVVFRDVQDNLKIIRGKV 109


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
           protein 68 protein.
          Length = 5079

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 458 ETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGK 354
           E  KLM +L +Y    ++ QDF+E+   LR LR +
Sbjct: 326 EVLKLMEDLIEYFAQPNDEQDFEEKQNHLRALRSR 360


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
           protein.
          Length = 5071

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 458 ETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGK 354
           E  KLM +L +Y    ++ QDF+E+   LR LR +
Sbjct: 447 EVLKLMEDLIEYFAQPNDEQDFEEKQNHLRALRSR 481


>AC006642-8|AAF39827.2|  365|Caenorhabditis elegans Laterally
           symmetric (defectivein lateral asymmetry) protein 2,
           isoform a protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/46 (21%), Positives = 27/46 (58%)
 Frame = -1

Query: 548 NSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFR 411
           NS    + +  S+   H + + ++++ +HM+  ++MM+ +DY  ++
Sbjct: 13  NSADQSLSEFNSSSMTHGSNQSVYHHNQHMDDSEMMMDEQDYSQYQ 58


>AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical
            protein F54G2.1b protein.
          Length = 972

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 560  ALPTNSKSMKVVKIFSARPLHTNEEIIHYY 471
            AL TN + MK+VKI S     T + I  YY
Sbjct: 934  ALDTNPEHMKLVKILSLNQTPTEQLIEKYY 963


>AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical
            protein F54G2.1a protein.
          Length = 1126

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 560  ALPTNSKSMKVVKIFSARPLHTNEEIIHYY 471
            AL TN + MK+VKI S     T + I  YY
Sbjct: 918  ALDTNPEHMKLVKILSLNQTPTEQLIEKYY 947


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,811,706
Number of Sequences: 27780
Number of extensions: 287148
Number of successful extensions: 608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)