Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b04r
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49500.1 68418.m06126 signal recognition particle 54 kDa prot...    31   0.57 
At5g50210.1 68418.m06219 quinolinate synthetase A-related contai...    30   1.3  
At3g45290.1 68416.m04890 seven transmembrane MLO family protein ...    29   2.3  
At3g02920.1 68416.m00287 replication protein-related similar to ...    29   2.3  
At3g62680.1 68416.m07041 proline-rich family protein contains pr...    29   4.0  
At5g43390.1 68418.m05304 hypothetical protein strong similarity ...    28   5.3  
At1g32770.1 68414.m04040 no apical meristem (NAM) family protein...    27   9.2  

>At5g49500.1 68418.m06126 signal recognition particle 54 kDa protein
           2 / SRP54 (SRP-54B) identical to SP|P49966 Signal
           recognition particle 54 kDa protein 2 (SRP54)
           {Arabidopsis thaliana}
          Length = 497

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = -1

Query: 533 KVVKIFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGK 354
           K+ +  +     TNEE+    P+     ++M   R  G    E  +  EE KRL  + GK
Sbjct: 374 KIKRYMTMMDSMTNEELDSSNPKVFNESRIMRIARGSGRIVREVMEMLEEYKRLTTMWGK 433

Query: 353 VKVWRRL 333
           VK  + L
Sbjct: 434 VKGLKNL 440


>At5g50210.1 68418.m06219 quinolinate synthetase A-related contains
           weak similarity to Swiss-Prot:P11458 quinolinate
           synthetase A [Escherichia coli]
          Length = 718

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 554 PTNSKSMKVVKIFSARPLHTNEEIIHYYPRH 462
           P +     +VK+F    L TNEEI + +P+H
Sbjct: 434 PDSYMGANIVKLFQQMTLMTNEEIANIHPKH 464


>At3g45290.1 68416.m04890 seven transmembrane MLO family protein /
           MLO-like protein 3 (MLO3) membrane protein Mlo3
           [Arabidopsis thaliana] gi|14091576|gb|AAK53796; similar
           to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221
           [Hordeum vulgare][Barley]
          Length = 508

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 441 HQFMRLHVSRIIVYNFLICVQRSSREDFDNLHGL 542
           H F+  HVS    +NF   +QRS  EDF  + G+
Sbjct: 247 HGFIFAHVSSNNAFNFQNYIQRSLHEDFKTVVGI 280


>At3g02920.1 68416.m00287 replication protein-related similar to
           replication protein A 30kDa [Oryza sativa (japonica
           cultivar-group)] GI:13516746; contains InterPro entry
           IPR004365: OB-fold nucleic acid binding domain
          Length = 278

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 527 VKIFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRD 408
           V +FS RP+    EI+H++   M  H     LR   + +D
Sbjct: 136 VNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQD 175


>At3g62680.1 68416.m07041 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 313

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 281 YTKHTTPLILLLPPSYQATASKP*LYLGVLAISSSPP 391
           YTK T P  +  PP Y+ T S P +Y    + SS PP
Sbjct: 130 YTKPTIPPPVYTPPVYKPTPSPP-VYKKSPSYSSPPP 165


>At5g43390.1 68418.m05304 hypothetical protein strong similarity to
           unknown protein (emb|CAB86628.1)
          Length = 643

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 473 YPRHMETHKLMM-NLRDYGLFRDEHQDFKEEMKRLRELRGKVKVWRR 336
           Y  H +T  L +  L D+G F+D  +     ++  +  RGK +VWR+
Sbjct: 119 YKNHPKTLALNIPTLVDFGYFKDLPEILLRILEGQQTERGKTRVWRK 165


>At1g32770.1 68414.m04040 no apical meristem (NAM) family protein
           similar to OsNAC7 protein GB:BAA89801 GI:6730944 from
           [Oryza sativa]
          Length = 358

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = -1

Query: 566 EVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPR-HMETHKLMMN-LRDYGLFRDEHQDF 393
           +V L  N +S KV   F   P  T EE++HYY R  + + K+ ++ +R+  L + E  D 
Sbjct: 5   KVNLSINGQS-KVPPGFRFHP--TEEELLHYYLRKKVNSQKIDLDVIREVDLNKLEPWDI 61

Query: 392 KEEMK 378
           +EE +
Sbjct: 62  QEECR 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,809,209
Number of Sequences: 28952
Number of extensions: 264173
Number of successful extensions: 615
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)