Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b04f
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    31   0.13 
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    28   1.2  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   3.8  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   6.6  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        25   6.6  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   8.7  

>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 17/42 (40%), Positives = 30/42 (71%)
 Frame = +1

Query: 256 HKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVKVWRRLLD 381
           H L+M  ++  +++DE Q  KEEMKR+ +LR +++  R+LL+
Sbjct: 13  HPLLMRNQEK-VWKDE-QAHKEEMKRVEQLRREIEEERQLLE 52


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 184 KIFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEM 327
           KI SA    +NE  I +Y RH ++HK  +       + DE +    E+
Sbjct: 255 KIASANAGSSNEISIPHYQRHKKSHKGAIQDSSIQSYLDEEEKLSREL 302


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 253 THKLMMNLRDYGLFRDEHQDFKEEMKRLRELR 348
           T K M+ L++   F+D+++  KEE KRL + R
Sbjct: 178 TQKQMLQLQNEN-FKDDYEKIKEENKRLYKER 208


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 73  AQLINTSTTYARRMKRLSNRIFGEVALPTNSKS 171
           ++ +NT  TYA  +K  S+++ G V  P    S
Sbjct: 2   SETLNTPPTYAWVLKAFSSKLAGTVTKPVTKMS 34


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 228 YNFLICVQRSSREDFDNLHGL 166
           +N+++C     REDF  +H +
Sbjct: 118 WNYMLCKNNRHREDFSRIHDI 138


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 76   QLINTSTTYARRMKRLSNRIFGEVALPTNSKSMKV 180
            ++INT  T    +    ++ +GE  LPT+S  + V
Sbjct: 1326 EIINTDRTLGATLSNKISKRYGEEGLPTDSIRVNV 1360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,672
Number of Sequences: 5004
Number of extensions: 45764
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)