Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b04f
(615 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18817| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 6e-10
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 31 0.74
SB_44229| Best HMM Match : DUF947 (HMM E-Value=0.67) 30 1.7
SB_32331| Best HMM Match : DivIVA (HMM E-Value=0.86) 30 1.7
SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24) 30 1.7
SB_33833| Best HMM Match : DUF947 (HMM E-Value=0.2) 30 1.7
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05) 29 3.0
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_53145| Best HMM Match : TPR_1 (HMM E-Value=3.4e-08) 27 9.1
>SB_18817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 61.3 bits (142), Expect = 6e-10
Identities = 32/72 (44%), Positives = 42/72 (58%)
Frame = +1
Query: 91 STTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHKLMM 270
ST YAR+M L RIFG++ P +S KVV FS RPL I YYP + + L++
Sbjct: 2 STNYARKMALLQARIFGKLTRPVTKQSYKVVTHFSRRPL--GGAINSYYPPLKQFNSLLL 59
Query: 271 NLRDYGLFRDEH 306
LR G +RD+H
Sbjct: 60 RLRHLGFYRDDH 71
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 31.1 bits (67), Expect = 0.74
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 214 NEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVKVW 366
N HY + T ++ L++ G EH+D KE++KRL R + VW
Sbjct: 485 NHSDSHY--ASLSTAEVKQRLKNIGELIPEHEDAKEKLKRLESTR-HIMVW 532
>SB_44229| Best HMM Match : DUF947 (HMM E-Value=0.67)
Length = 465
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 214 NEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVKVW 366
N HY + T ++ L++ G +H+D KE++KRL R + VW
Sbjct: 348 NHSDSHY--ASLSTAEVKQRLKNIGELVPDHEDAKEKLKRLESTR-HIMVW 395
>SB_32331| Best HMM Match : DivIVA (HMM E-Value=0.86)
Length = 888
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 214 NEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVKVW 366
N HY + T ++ L++ G +H+D KE++KRL R + VW
Sbjct: 119 NHSDSHY--ASLSTAEVKQRLKNIGELVPDHEDAKEKLKRLESTR-HIMVW 166
>SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)
Length = 685
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 214 NEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVKVW 366
N HY + T ++ L++ G +H+D KE++KRL R + VW
Sbjct: 119 NHSDSHY--ASLSTAEVKQRLKNIGELVPDHEDAKEKLKRLESTR-HIMVW 166
>SB_33833| Best HMM Match : DUF947 (HMM E-Value=0.2)
Length = 1106
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 214 NEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVKVW 366
N HY + T ++ L++ G +H+D KE++KRL R + VW
Sbjct: 439 NHSDSHY--ASLSTAEVKQRLKNIGELVPDHEDAKEKLKRLESTR-HIMVW 486
>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
Length = 2293
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/90 (26%), Positives = 40/90 (44%)
Frame = +1
Query: 91 STTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHKLMM 270
S ++ K +S R+F ++ NS K + ARP +YPR T+K +
Sbjct: 1814 SRVVTKKGKAMSERLFEAASMVQNSVYGKSTQGIHARPTEP------WYPRVQPTYKGVK 1867
Query: 271 NLRDYGLFRDEHQDFKEEMKRLRELRGKVK 360
+ GLF D +D E+ K + + + K
Sbjct: 1868 PRK--GLFGDVDEDTVEKCKSIGKAEFRTK 1895
>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +1
Query: 130 RIFGEVALPTNS-KSMKVVKIFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEH 306
R+ E AL N K +++ + R L+ +++ H KL +L+D G+ +E
Sbjct: 978 RLLTEHALAWNKRKILRMADVICKRYLNVVKQLSH------ANKKLSAHLKDIGVSENEI 1031
Query: 307 QDFKEEMKRLREL 345
+ EE+++LRE+
Sbjct: 1032 IGWNEEVQKLREM 1044
>SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 40 R*TMATNYTKYAQLINTSTTYARRMKRLSNRIFGEVALPTNSK 168
R TMATN TKY++ + T R +N + + TN+K
Sbjct: 161 RATMATN-TKYSRATMATNTKCSRATMATNTKYSRATMATNTK 202
>SB_53145| Best HMM Match : TPR_1 (HMM E-Value=3.4e-08)
Length = 200
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 169 SMKVVKIFSARPLHTNEEIIHYYPRHMETHK 261
S++ VK LH++ +++HYY R ++ K
Sbjct: 3 SLENVKALHEAGLHSSAQLLHYYTRALQLRK 33
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,130,236
Number of Sequences: 59808
Number of extensions: 327687
Number of successful extensions: 661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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