Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b04f
         (615 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   0.48 
AF457563-1|AAL68793.1|   48|Anopheles gambiae hypothetical prote...    25   2.6  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   7.8  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 27.1 bits (57), Expect = 0.48
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 252 LHVSRIIVYNFLICVQRSSREDFDNLHGLGVGR*GN 145
           +H+ ++I+  F    +++  E FD  H + VGR G+
Sbjct: 1   MHIKQVIIQGFKSYREQTVVEPFDKRHNVVVGRNGS 36


>AF457563-1|AAL68793.1|   48|Anopheles gambiae hypothetical protein
           16 protein.
          Length = 48

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 406 LILLLPPSYQATASKP 359
           L+LLLPP+Y  T + P
Sbjct: 18  LLLLLPPAYSTTLTPP 33


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 247 METHKLMMNLRDYGLF---RDEHQDFKEEMKRLRELRGKVK 360
           + T  L+    D+ L    R EHQ    E  ++R  RG+++
Sbjct: 599 LRTLNLLNRSTDHALLAQKRQEHQRLVRECDKIRNQRGQIE 639


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,096
Number of Sequences: 2352
Number of extensions: 10562
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60132501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)