Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b04f
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.4  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   9.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 570 YASTFNMVCIKYKVRQGNNNNVFY 499
           YAS    VC+ Y  R+   +NV Y
Sbjct: 375 YASLLEFVCVNYVGRKRPMHNVVY 398


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 570 YASTFNMVCIKYKVRQGNNNNVFY 499
           YAS    VC+ Y  R+   +NV Y
Sbjct: 344 YASLLEFVCVNYVGRKRPMHNVVY 367


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 570 YASTFNMVCIKYKVRQGNNNNVFY 499
           YAS    VC+ Y  R+   +NV Y
Sbjct: 395 YASLLEFVCVNYVGRKRPMHNVVY 418


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 570 YASTFNMVCIKYKVRQGNNNNVFY 499
           YAS    VC+ Y  R+   +NV Y
Sbjct: 344 YASLLEFVCVNYVGRKRPMHNVVY 367


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 135 DPIGQALHSSRVRCRR 88
           DP  + + S+RVRC R
Sbjct: 97  DPANEFIVSTRVRCGR 112


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 135 DPIGQALHSSRVRCRR 88
           DP  + + S+RVRC R
Sbjct: 113 DPANEFIVSTRVRCGR 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,650
Number of Sequences: 438
Number of extensions: 3309
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)