Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b04f
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49500.1 68418.m06126 signal recognition particle 54 kDa prot...    31   0.46 
At5g50210.1 68418.m06219 quinolinate synthetase A-related contai...    30   1.1  
At3g45290.1 68416.m04890 seven transmembrane MLO family protein ...    29   1.9  
At3g02920.1 68416.m00287 replication protein-related similar to ...    29   1.9  
At3g62680.1 68416.m07041 proline-rich family protein contains pr...    29   3.2  
At5g43390.1 68418.m05304 hypothetical protein strong similarity ...    28   4.3  
At1g32770.1 68414.m04040 no apical meristem (NAM) family protein...    27   7.5  
At3g63320.1 68416.m07123 protein phosphatase 2C-related / PP2C-r...    27   9.9  

>At5g49500.1 68418.m06126 signal recognition particle 54 kDa protein
           2 / SRP54 (SRP-54B) identical to SP|P49966 Signal
           recognition particle 54 kDa protein 2 (SRP54)
           {Arabidopsis thaliana}
          Length = 497

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +1

Query: 175 KVVKIFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGK 354
           K+ +  +     TNEE+    P+     ++M   R  G    E  +  EE KRL  + GK
Sbjct: 374 KIKRYMTMMDSMTNEELDSSNPKVFNESRIMRIARGSGRIVREVMEMLEEYKRLTTMWGK 433

Query: 355 VKVWRRL 375
           VK  + L
Sbjct: 434 VKGLKNL 440


>At5g50210.1 68418.m06219 quinolinate synthetase A-related contains
           weak similarity to Swiss-Prot:P11458 quinolinate
           synthetase A [Escherichia coli]
          Length = 718

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 154 PTNSKSMKVVKIFSARPLHTNEEIIHYYPRH 246
           P +     +VK+F    L TNEEI + +P+H
Sbjct: 434 PDSYMGANIVKLFQQMTLMTNEEIANIHPKH 464


>At3g45290.1 68416.m04890 seven transmembrane MLO family protein /
           MLO-like protein 3 (MLO3) membrane protein Mlo3
           [Arabidopsis thaliana] gi|14091576|gb|AAK53796; similar
           to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221
           [Hordeum vulgare][Barley]
          Length = 508

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 267 HQFMRLHVSRIIVYNFLICVQRSSREDFDNLHGL 166
           H F+  HVS    +NF   +QRS  EDF  + G+
Sbjct: 247 HGFIFAHVSSNNAFNFQNYIQRSLHEDFKTVVGI 280


>At3g02920.1 68416.m00287 replication protein-related similar to
           replication protein A 30kDa [Oryza sativa (japonica
           cultivar-group)] GI:13516746; contains InterPro entry
           IPR004365: OB-fold nucleic acid binding domain
          Length = 278

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 181 VKIFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRD 300
           V +FS RP+    EI+H++   M  H     LR   + +D
Sbjct: 136 VNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQD 175


>At3g62680.1 68416.m07041 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 313

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 427 YTKHTTPLILLLPPSYQATASKP*LYLGVLAISSSPP 317
           YTK T P  +  PP Y+ T S P +Y    + SS PP
Sbjct: 130 YTKPTIPPPVYTPPVYKPTPSPP-VYKKSPSYSSPPP 165


>At5g43390.1 68418.m05304 hypothetical protein strong similarity to
           unknown protein (emb|CAB86628.1)
          Length = 643

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 235 YPRHMETHKLMM-NLRDYGLFRDEHQDFKEEMKRLRELRGKVKVWRR 372
           Y  H +T  L +  L D+G F+D  +     ++  +  RGK +VWR+
Sbjct: 119 YKNHPKTLALNIPTLVDFGYFKDLPEILLRILEGQQTERGKTRVWRK 165


>At1g32770.1 68414.m04040 no apical meristem (NAM) family protein
           similar to OsNAC7 protein GB:BAA89801 GI:6730944 from
           [Oryza sativa]
          Length = 358

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +1

Query: 142 EVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPR-HMETHKLMMN-LRDYGLFRDEHQDF 315
           +V L  N +S KV   F   P  T EE++HYY R  + + K+ ++ +R+  L + E  D 
Sbjct: 5   KVNLSINGQS-KVPPGFRFHP--TEEELLHYYLRKKVNSQKIDLDVIREVDLNKLEPWDI 61

Query: 316 KEEMK 330
           +EE +
Sbjct: 62  QEECR 66


>At3g63320.1 68416.m07123 protein phosphatase 2C-related /
           PP2C-related protein phosphatase 2C - Rattus norvegicus,
           EMBL:AF095927
          Length = 423

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/71 (22%), Positives = 32/71 (45%)
 Frame = +1

Query: 154 PTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKR 333
           P  +K+  ++K++  R  + +     +    +E    +M      L +D H D ++EM R
Sbjct: 201 PEEAKAT-LIKLYRERKRNQDSSPSRFSDLKLEHRTGLMRFIAKELTKDHHPDREDEMLR 259

Query: 334 LRELRGKVKVW 366
           ++   G V  W
Sbjct: 260 VKAAGGYVTKW 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,054,626
Number of Sequences: 28952
Number of extensions: 231972
Number of successful extensions: 581
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)