Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b03r
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    33   0.17 
At5g52490.1 68418.m06512 fibrillarin, putative similar to fibril...    31   0.51 
At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re...    31   0.68 
At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family...    29   2.7  
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar...    29   3.6  
At3g18810.1 68416.m02389 protein kinase family protein contains ...    29   3.6  
At1g66400.1 68414.m07541 calmodulin-related protein, putative si...    29   3.6  
At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related...    28   6.3  
At1g30780.1 68414.m03763 F-box family protein                          28   6.3  
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ...    27   8.4  
At4g08350.1 68417.m01380 KOW domain-containing transcription fac...    27   8.4  
At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327    27   8.4  

>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
           protein (PFT1) PMID: 12815435
          Length = 836

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = -1

Query: 532 LVDTYEPISVGPALVDTYVPISVGPALVDTYEPISVGPALVDTYEPISVGP---AIVEGA 362
           L  T  P+ V  A V   +P++  P       P+S     +   +P+SVGP   A V+  
Sbjct: 242 LPQTQSPVKVDRATVAPSIPVTGQPPA-----PVSSANGPIQNRQPVSVGPVPTATVKVE 296

Query: 361 PVTVTGADGTPLVQIIINVNRPS 293
           P TVT     P    I  V RP+
Sbjct: 297 PSTVTSMAPVPSFPHIPAVARPA 319



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/72 (26%), Positives = 28/72 (38%)
 Frame = -1

Query: 415 LVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPE 236
           L  T  P+ V  A V  + + VTG    P+      +     ++  PV    +  EP   
Sbjct: 242 LPQTQSPVKVDRATVAPS-IPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTV 300

Query: 235 VVILPTPVFPEI 200
             + P P FP I
Sbjct: 301 TSMAPVPSFPHI 312


>At5g52490.1 68418.m06512 fibrillarin, putative similar to
           fibrillarin from {Xenopus laevis} SP|P22232, {Mus
           musculus} SP|P35550, {Homo sapiens} SP|P22087
          Length = 292

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 22/61 (36%), Positives = 28/61 (45%)
 Frame = +2

Query: 347 GDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRSNRDGFVGV 526
           G + RG+   G S R    G  KS SDG G+ G +K       H GV  ++S  D  V  
Sbjct: 24  GSAVRGSGRGGESGRGRGPGRVKSESDG-GIKGGSKVLVTPHRHAGVFVAKSKADALVTK 82

Query: 527 N 529
           N
Sbjct: 83  N 83


>At3g27550.1 68416.m03443 group II intron splicing factor
           CRS1-related contains weak similarity to CRS1 [Zea mays]
           gi|9837550|gb|AAG00595
          Length = 491

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 311 DDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRS 424
           DDD DE   +SA  S +  F N  S+RDG +  +KS+S
Sbjct: 445 DDDEDENRTVSASSSKQSRFRN-NSSRDG-INNSKSKS 480


>At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family
           protein
          Length = 242

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
 Frame = -1

Query: 478 VPISVGPALVDTYE-PISVGPALVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVN 302
           VP+S G  +      P  +GP     + P   GP+  E   VTV G DG P       +N
Sbjct: 140 VPVSEGGVISSPSSYPWPLGPREGSAFSP---GPSPSEITSVTVPGKDGVPF------IN 190

Query: 301 RPSEIAADPVDVEDIAEEPLP 239
               +     DV+  +  PLP
Sbjct: 191 SNPAVPLPTGDVDSTSINPLP 211


>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
           RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 616

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 98  KSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQR 247
           +S  G   DR + + G   FG  R+G     R+  F  +GS  ++  G R
Sbjct: 552 RSPEGYGSDRSSQSGGRSSFGGGRSGGSSNNRSSGFGDFGSDRSSQSGGR 601


>At3g18810.1 68416.m02389 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 700

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +2

Query: 314 DDLDEGSAIS-AGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVN 490
           DD   GS    + DS       G +N DG  G N + ++ +     N   +N D + G N
Sbjct: 47  DDSSNGSPQPPSSDSQSPPSPQGNNNNDGNNGNNNNDNNNN-----NNGNNNNDNNNGNN 101

Query: 491 KSRSNRDGFVGVNKSRSNGDG 553
           K  +N     G N + +N +G
Sbjct: 102 KDNNNN----GNNNNGNNNNG 118



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = +2

Query: 323 DEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRS 502
           D  S  S   ++    NNG +N D     N   ++ D   G NK  +N   +   N +  
Sbjct: 60  DSQSPPSPQGNNNNDGNNGNNNNDN-NNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNG 118

Query: 503 NRDGFVGVNKSRSNGD 550
           N +   G N + +N D
Sbjct: 119 NDNN--GNNNNGNNND 132


>At1g66400.1 68414.m07541 calmodulin-related protein, putative
           similar to calmodulin-related protein 2, touch-induced
           from SP:P25070 [Arabidopsis thaliana]; contains Pfam
           profile: PF00036 EF hand (4 copies)
          Length = 157

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 317 DLDEGSAISAGDSHRGTFNNGR--SNRDGLVGVNKSRSDGDGLV 442
           DLD    ISA + H    N G   S +D    +NK  SDGDG V
Sbjct: 99  DLDRNGRISANELHSVMKNLGEKCSIQDCQRMINKVDSDGDGCV 142


>At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 244

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 263 LNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDG 397
           +N+N  S +   T  ++ DL  G + S GDS+    NN  S+ DG
Sbjct: 142 MNMNNYSSHALSTDDINLDLTLGPSKSIGDSNNIINNNTNSSFDG 186


>At1g30780.1 68414.m03763 F-box family protein 
          Length = 482

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 277 PVDVEDIAEEPLPEVVILPTPVFPEID 197
           P D+  +A  PLP+V +LP P FP+ +
Sbjct: 75  PPDLPLLAP-PLPDVPLLPPPAFPDFE 100


>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
           putative transcriptional coactivator ALY, Mus musculus,
           EMBL:MMU89876
          Length = 288

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
 Frame = +2

Query: 221 GENNNFGQRLFGNV-LNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDG 397
           G NN+    L G V +N+ G++G L RTV           I  G   RG    GR  R  
Sbjct: 169 GGNNSSEAPLSGRVNVNVTGLNGRLKRTV----------VIQQGGGGRGRVRGGRGGRGP 218

Query: 398 LVGVNK----SRSDGDGLVGVNKS-RSNRDGHVGVNKSRSNRDGFVGVNKSRSNGD 550
              V++        G G+ G     R+   G+ G  +     +G   V KS ++ D
Sbjct: 219 APTVSRRLPIHNQQGGGMRGGRGGFRARGRGNGGRGRGGGRGNGKKPVEKSAADLD 274


>At4g08350.1 68417.m01380 KOW domain-containing transcription factor
           family protein chromatin structural protein homolog
           Supt5hp - Mus musculus,PID:g2754752
          Length = 1029

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 27/89 (30%), Positives = 37/89 (41%)
 Frame = +2

Query: 86  EGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVL 265
           E  G+   GSR  RG +N+ +DD+ E+ + E     + D   YGS      G +   +  
Sbjct: 32  EERGRGGGGSRRKRGRSNF-IDDYAEEDSQE----EDDDDEDYGSSR----GGKGAASKR 82

Query: 266 NINGISGNLGRTVHVDDDLDEGSAISAGD 352
                S  L R  H  DD DE     A D
Sbjct: 83  KKPSASIFLDREAHQVDDEDEEEEDEAED 111


>At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327
          Length = 859

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 272 NGISGNLGRTVHVDDDLDEGSAISAGDS 355
           NG  G LG+  H++D +   ++++AG+S
Sbjct: 68  NGSKGKLGKAAHLEDWITTITSLTAGES 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,535,678
Number of Sequences: 28952
Number of extensions: 250574
Number of successful extensions: 848
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)