Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b03f
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.48
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 3.4
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 3.4
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 26 3.4
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 26 4.5
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 6.0
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 25 7.9
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 7.9
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 29.1 bits (62), Expect = 0.48
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 349 INVNRPSEIAADPVDVEDIAEEPLPEVVILPTPVFPE 459
I+ N P+ A+ P+ E + EEPLP LP PE
Sbjct: 80 ISKNEPTSEASKPLLNELVPEEPLPREPPLPNEPVPE 116
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 27.1 bits (57), Expect = 2.0
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -1
Query: 390 NGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKS-RSDGDGLVGV 214
NG S + ++D+ S + D +FN+ R R VN RSD D L+G+
Sbjct: 194 NGFSTSTEEEEEEEEDIVSASWVDNLDMDMASFNSHRE-RFLTEHVNMDERSDDDFLLGL 252
Query: 213 NKSRSNRDGH 184
S S+ D H
Sbjct: 253 ISSDSSVDDH 262
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 3.4
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
Frame = -1
Query: 507 FGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVDDDLDEGS 328
FG + G L G RN G+G + G +FG N G T L GS
Sbjct: 59 FGSNTNGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ-SNTPAFGGTNNATNPSGGGL-FGS 116
Query: 327 AISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVG--VNKSRSNRDGHVGVNKSRSN 157
+ +++ GT + SN G G S+ G GL G + +N G G S +N
Sbjct: 117 NTANNNANTGTSFSFGSNA-GSTGFG-SQGTGGGLFGSSTTPATTNAFGTSGFVSSNAN 173
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 229 ISVGPALVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIII 351
+S G + D + P G A++ A V+GAD P++ ++
Sbjct: 164 VSSGGVMADLWCPAQRGTALIFYAFFVVSGADFGPIISSLV 204
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.2 bits (55), Expect = 3.4
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = -1
Query: 456 RKYG-SGENNNFGQRLFGNVLN--INGISGNLGRTVHVDDDLDEGSA 325
R+YG G N + L ++N + G +L RTV+V+ D+DE A
Sbjct: 461 RRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHL-RTVYVEHDIDESEA 506
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 355 VNRPSEIAADPVDVEDIAEEPLPEVVILPTPV 450
++ P++ A+ V E E+P+P V+ P PV
Sbjct: 200 LSSPTQGASSNVTPESPPEKPIPSFVLSPPPV 231
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 534 GTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNING 385
GT Y + FG+ + G + DF G +N + ++ GNV ++G
Sbjct: 762 GTMPYNNNKFGQPQQGYMSQSGFNDFPPIFGGHSNVYNRQQPGNVSGMSG 811
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 360 VHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGD 229
+HVD + +GSA+ + R++ DGL VN + + G+
Sbjct: 248 LHVDHETGDGSAVGRAILLDDVIDRLRNSPDGLENVNITFNIGE 291
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +1
Query: 322 DGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPEVVILPTPVFP 456
DG P + + P+E P + IA P+P ++ P P
Sbjct: 524 DGLPRYEEATRPSSPTESVEIPSNTTTIAPSPVPTIIAPALPSTP 568
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.137 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,557
Number of Sequences: 5004
Number of extensions: 37388
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -