Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b03f
(573 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 33 0.14
At5g52490.1 68418.m06512 fibrillarin, putative similar to fibril... 31 0.41
At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re... 31 0.55
At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family... 29 2.2
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 29 2.9
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 2.9
At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related... 28 5.1
At1g30780.1 68414.m03763 F-box family protein 28 5.1
At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327 27 6.7
At5g37540.1 68418.m04521 aspartyl protease family protein weak s... 27 8.9
At4g28080.1 68417.m04027 expressed protein 27 8.9
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 27 8.9
At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial (... 27 8.9
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 33.1 bits (72), Expect = 0.14
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +1
Query: 130 LVDTYEPISVGPALVDTYVPISVGPALVDTYEPISVGPALVDTYEPISVGP---AIVEGA 300
L T P+ V A V +P++ P P+S + +P+SVGP A V+
Sbjct: 242 LPQTQSPVKVDRATVAPSIPVTGQPPA-----PVSSANGPIQNRQPVSVGPVPTATVKVE 296
Query: 301 PVTVTGADGTPLVQIIINVNRPS 369
P TVT P I V RP+
Sbjct: 297 PSTVTSMAPVPSFPHIPAVARPA 319
Score = 30.3 bits (65), Expect = 0.95
Identities = 19/72 (26%), Positives = 28/72 (38%)
Frame = +1
Query: 247 LVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPE 426
L T P+ V A V + + VTG P+ + ++ PV + EP
Sbjct: 242 LPQTQSPVKVDRATVAPS-IPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTV 300
Query: 427 VVILPTPVFPEI 462
+ P P FP I
Sbjct: 301 TSMAPVPSFPHI 312
Score = 27.1 bits (57), Expect = 8.9
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Frame = +1
Query: 109 PISVGPALVDTYEPISVGPALVDTYVPISVGPALVDTYEPISVGPALVDTYEPISVGPAI 288
P+ V A V P++ P P+S + +P+SVGP T + V P+
Sbjct: 248 PVKVDRATVAPSIPVTGQPP-----APVSSANGPIQNRQPVSVGPVPTAT---VKVEPST 299
Query: 289 VEG-APVTV---TGADGTPLVQII--INVNRPSEIAADPVDVEDIAEEPLPEVVILPTP 447
V APV A P Q I I + S ++ D V + A + P VV TP
Sbjct: 300 VTSMAPVPSFPHIPAVARPATQAIPSIQTSSASPVSQDMVSNAENAPDIKPVVVSGMTP 358
>At5g52490.1 68418.m06512 fibrillarin, putative similar to
fibrillarin from {Xenopus laevis} SP|P22232, {Mus
musculus} SP|P35550, {Homo sapiens} SP|P22087
Length = 292
Score = 31.5 bits (68), Expect = 0.41
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = -1
Query: 315 GDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRSNRDGFVGV 136
G + RG+ G S R G KS SDG G+ G +K H GV ++S D V
Sbjct: 24 GSAVRGSGRGGESGRGRGPGRVKSESDG-GIKGGSKVLVTPHRHAGVFVAKSKADALVTK 82
Query: 135 N 133
N
Sbjct: 83 N 83
>At3g27550.1 68416.m03443 group II intron splicing factor
CRS1-related contains weak similarity to CRS1 [Zea mays]
gi|9837550|gb|AAG00595
Length = 491
Score = 31.1 bits (67), Expect = 0.55
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -1
Query: 351 DDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRS 238
DDD DE +SA S + F N S+RDG + +KS+S
Sbjct: 445 DDDEDENRTVSASSSKQSRFRN-NSSRDG-INNSKSKS 480
>At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family
protein
Length = 242
Score = 29.1 bits (62), Expect = 2.2
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +1
Query: 184 VPISVGPALVDTYE-PISVGPALVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVN 360
VP+S G + P +GP + P GP+ E VTV G DG P +N
Sbjct: 140 VPVSEGGVISSPSSYPWPLGPREGSAFSP---GPSPSEITSVTVPGKDGVPF------IN 190
Query: 361 RPSEIAADPVDVEDIAEEPLP 423
+ DV+ + PLP
Sbjct: 191 SNPAVPLPTGDVDSTSINPLP 211
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 564 KSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQR 415
+S G DR + + G FG R+G R+ F +GS ++ G R
Sbjct: 552 RSPEGYGSDRSSQSGGRSSFGGGRSGGSSNNRSSGFGDFGSDRSSQSGGR 601
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 28.7 bits (61), Expect = 2.9
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -1
Query: 348 DDLDEGSAIS-AGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVN 172
DD GS + DS G +N DG G N + ++ + N +N D + G N
Sbjct: 47 DDSSNGSPQPPSSDSQSPPSPQGNNNNDGNNGNNNNDNNNN-----NNGNNNNDNNNGNN 101
Query: 171 KSRSNRDGFVGVNKSRSNGDG 109
K +N G N + +N +G
Sbjct: 102 KDNNNN----GNNNNGNNNNG 118
Score = 27.9 bits (59), Expect = 5.1
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = -1
Query: 339 DEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRS 160
D S S ++ NNG +N D N ++ D G NK +N + N +
Sbjct: 60 DSQSPPSPQGNNNNDGNNGNNNNDN-NNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNG 118
Query: 159 NRDGFVGVNKSRSNGD 112
N + G N + +N D
Sbjct: 119 NDNN--GNNNNGNNND 132
>At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 244
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 399 LNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDG 265
+N+N S + T ++ DL G + S GDS+ NN S+ DG
Sbjct: 142 MNMNNYSSHALSTDDINLDLTLGPSKSIGDSNNIINNNTNSSFDG 186
>At1g30780.1 68414.m03763 F-box family protein
Length = 482
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 385 PVDVEDIAEEPLPEVVILPTPVFPEID 465
P D+ +A PLP+V +LP P FP+ +
Sbjct: 75 PPDLPLLAP-PLPDVPLLPPPAFPDFE 100
>At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327
Length = 859
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 390 NGISGNLGRTVHVDDDLDEGSAISAGDS 307
NG G LG+ H++D + ++++AG+S
Sbjct: 68 NGSKGKLGKAAHLEDWITTITSLTAGES 95
>At5g37540.1 68418.m04521 aspartyl protease family protein weak
similarity to CND41, chloroplast nucleoid DNA binding
protein [Nicotiana tabacum] GI:2541876; contains Prosite
PS00141: Eukaryotic and viral aspartyl proteases active
site; contains 1 predicted transmembrane domain
Length = 442
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = -1
Query: 297 TFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNK------SRSNRDG 148
TF+N ++ ++G K +D G++G+N R + ++K +RSNR G
Sbjct: 183 TFSNSQTTPPLILGCAKESTDEKGILGMNLGRLSFISQAKISKFSYCIPTRSNRPG 238
>At4g28080.1 68417.m04027 expressed protein
Length = 1660
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 363 TVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVN 250
TVH DDD DEG + + F++GR R L +N
Sbjct: 1078 TVHEDDDSDEGWQEAV---PKNRFSSGRRTRPSLAKLN 1112
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -1
Query: 510 DFGEDRAGELHGFRNVDFRKYGSGENNNFG-QRLFGNVLNINGISGNLGRTVHVDDDLDE 334
DFGE + ++ + F ++ + ++ L G V+ N + + GR+ + D
Sbjct: 349 DFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDS 408
Query: 333 GSAISAGDSHRGTFNNGRSNRD 268
G+ + G S +NNG +N+D
Sbjct: 409 GNQWNGGYSRGQGYNNGYANQD 430
>At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial
(ALDH3) nearly identical to mitochondrial aldehyde
dehydrogenase ALDH3 [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; contains Pfam profile PF00171:
aldehyde dehydrogenase (NAD) family protein
Length = 534
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +1
Query: 199 GPALVDT-YEPISVGPALVDTYEPI-----SVGPAIVEGAPVTVTGADGTPLVQIII 351
GP V T +EPI V ++ P+ +GPA+ G V + A+ TPL +++
Sbjct: 181 GPHHVQTLHEPIGVAGQIIPWNFPLLMLSWKLGPALACGNTVVLKTAEQTPLSALLV 237
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.137 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,190,811
Number of Sequences: 28952
Number of extensions: 221700
Number of successful extensions: 567
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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