Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b02r
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm rece...    29   3.3  
AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical ...    29   3.3  

>AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm
           receptor protein 120 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = -2

Query: 538 LHVKGFRSHLCLKRMIFTFISLRSWVYELHHVL-----HLFGKSDVMYGDTKFLILSDGS 374
           +H +  R H    +++    S+ S +Y L  VL     H+ G   ++Y  T FL +S   
Sbjct: 29  IHTRATR-HFGSYKLLMASFSIFSILYALVEVLTQPIMHISGTGLMLYVGTTFLPISKEF 87

Query: 373 GNRAAPFKCNCF 338
           G+  A F C+ F
Sbjct: 88  GHFIAAFYCSTF 99


>AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical
           protein Y45G12C.6 protein.
          Length = 274

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = -2

Query: 538 LHVKGFRSHLCLKRMIFTFISLRSWVYELHHVL-----HLFGKSDVMYGDTKFLILSDGS 374
           +H +  R H    +++    S+ S +Y L  VL     H+ G   ++Y  T FL +S   
Sbjct: 29  IHTRATR-HFGSYKLLMASFSIFSILYALVEVLTQPIMHISGTGLMLYVGTTFLPISKEF 87

Query: 373 GNRAAPFKCNCF 338
           G+  A F C+ F
Sbjct: 88  GHFIAAFYCSTF 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,318,891
Number of Sequences: 27780
Number of extensions: 268811
Number of successful extensions: 474
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)