Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b02f
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...   111   7e-26
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    29   0.64 
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    27   1.5  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   6.0  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    25   6.0  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   7.9  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score =  111 bits (267), Expect = 7e-26
 Identities = 64/149 (42%), Positives = 84/149 (56%), Gaps = 8/149 (5%)
 Frame = +3

Query: 150 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTA--ATDDXXXXXXXXXXXVNTIPGIEEVN 323
           M+  KL KLQ+  RIGGKGTPRRK K    +A  A DD           +  + GI+EVN
Sbjct: 1   MDPSKLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADDKKVQGALKKLNMQNLAGIQEVN 60

Query: 324 MIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIAS 503
           M KEDG VI+F  P   +SL   T AI G  E K  +E+LPGIL+ LGP+ L  L+++A 
Sbjct: 61  MFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTALRQMAE 120

Query: 504 SVAAPK------PLEEDDEVPNLVGNFDE 572
            +   +         +D E+P+LV  FDE
Sbjct: 121 QLKVSEGEKGADAQADDGEIPDLVEKFDE 149


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 533 FLEWLRRGNTRRNPFQSVQAVGSELAEDT 447
           F++WL  GN+ R PF       SE  E+T
Sbjct: 126 FVDWLGMGNSSRPPFDIKGQTASEKVEET 154


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 87  NSVIKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGG-KGTPRRKKKV 230
           NSV++K         +  NSR+NS    +  S V + G  G+P  K+K+
Sbjct: 131 NSVVEKISQKNQEARSRANSRVNSRANSRANSSVSLAGMDGSPNWKRKM 179


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 138 KNSRMNSEKLKKLQSQVRIGGKGTPRRKKKV 230
           K  +   +KLKK   ++++    T +RK+KV
Sbjct: 148 KEKKEKKDKLKKKSKRLKLDDSHTQKRKRKV 178


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/68 (20%), Positives = 30/68 (44%)
 Frame = +3

Query: 366 KAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVAAPKPLEEDDEV 545
           + + +L++   A+      ++    +   ++ LGPD  ++ K I SS      L+ +D +
Sbjct: 211 RPEEALSSLKTALDSQPNYEEALSNMTTAITDLGPDAPSQAKNILSSFTNSSTLKLNDHL 270

Query: 546 PNLVGNFD 569
                 FD
Sbjct: 271 NEKAQEFD 278


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 493 GLRRVLPRLSHSRKTTRYLTSSA 561
           GL+R   RL H  K+TRY+ ++A
Sbjct: 26  GLKRFGCRLYHHSKSTRYIDATA 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,507
Number of Sequences: 5004
Number of extensions: 42966
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)